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The map label for this gene is yhjC [C]

Identifier: 114330722

GI number: 114330722

Start: 714064

End: 714996

Strand: Direct

Name: yhjC [C]

Synonym: Neut_0707

Alternate gene names: 114330722

Gene position: 714064-714996 (Clockwise)

Preceding gene: 114330716

Following gene: 114330723

Centisome position: 26.83

GC content: 49.73

Gene sequence:

>933_bases
ATGGATCGATTTGAGAACATGAATACGTTTGCGTACATCGTGGAAGCGGGCAGTATCAGCGCTGCTGCGGATCGTATGGA
TGTGGCCAAGTCTGTCATCAGCCGACGGTTAAAGGAACTGGAAGCGCACTTGGGCGTTCAGCTATTTCATCGCACTACGC
GGCAAATGAAGCTTACCGACAGCGGGCGTGCTTTTTACGAACAATCTGTTCGTATCCTCGCGGATATTCTCGAAGCCGAG
CACGCCGTATCGCAATTTCATGGTGCTTTAAAAGGTAATTTGAAAGTGGCAGTTCCACTTAGCTTTGGTTTGATGCATCT
GGGCCCGGCTATCACCGCATTCCTGCATACTCATCCGGGTATCAAATTTGATCTGGATTTCAATGATCGTCAGGTTGATT
TGCTGGCGGAAGGTTTTGATCTTGCCATCCGCATTGCCAGCTTACCTGATTCCAGCCTGATCGCGCGTCACCTGGCACCA
ATTCAAGCCGTTATGTGCGCCAGCCCGGCGTATCTGGAGCACATGGGTATGCCGCAGACACCTGAAGAGCTCATCAGGCA
TCGCTGTCTGGCCTACAATCTGATCAGTAATAGTGATAACTGGCATGTGTATGACCCTGCGGGACAATTGATCAAAACCA
GAATTACTCCCTACCTGAAAGCCAGTAATGGCGAGTTTCTGCGTGATGCCGCCGTCGATGGGCTGGGTATCGTATTGCTG
CCGGCTTTCATTGTTTATCGGGAAATCGAACACGGTGCGTTACTGCCGATATTAACGGAATACCACTATTCGCAACTGGC
AGCCTATGCCATCTACCCGCAAACTCGTCACCTCTCGCAGCGTGTCAGAGCATTTGTCGATTTCCTGAGCAAGCGATTTG
AAGTAATGCCTTATTGGGATTCTTGCTTGCGCCATACAAAAAATATTTCATGA

Upstream 100 bases:

>100_bases
GGTTCTGCTTACCAGAAGCATTATCTACGTTGTTGTAATAAGAATAAATAGTGTTTTATGTAAATAATTGTTCTTGTATC
TGGAACAATAAAAGGACTCT

Downstream 100 bases:

>100_bases
GGTTTCCTCCAAGTTATCAGCTTTACGGGATAAAACACAAGGTACGGTTAGCGGGTGTAAATTTTTGTGATAACAGCTTG
ATTCAGGGCAGGGAGGAAAT

Product: transcriptional regulator, LysR family protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDRFENMNTFAYIVEAGSISAAADRMDVAKSVISRRLKELEAHLGVQLFHRTTRQMKLTDSGRAFYEQSVRILADILEAE
HAVSQFHGALKGNLKVAVPLSFGLMHLGPAITAFLHTHPGIKFDLDFNDRQVDLLAEGFDLAIRIASLPDSSLIARHLAP
IQAVMCASPAYLEHMGMPQTPEELIRHRCLAYNLISNSDNWHVYDPAGQLIKTRITPYLKASNGEFLRDAAVDGLGIVLL
PAFIVYREIEHGALLPILTEYHYSQLAAYAIYPQTRHLSQRVRAFVDFLSKRFEVMPYWDSCLRHTKNIS

Sequences:

>Translated_310_residues
MDRFENMNTFAYIVEAGSISAAADRMDVAKSVISRRLKELEAHLGVQLFHRTTRQMKLTDSGRAFYEQSVRILADILEAE
HAVSQFHGALKGNLKVAVPLSFGLMHLGPAITAFLHTHPGIKFDLDFNDRQVDLLAEGFDLAIRIASLPDSSLIARHLAP
IQAVMCASPAYLEHMGMPQTPEELIRHRCLAYNLISNSDNWHVYDPAGQLIKTRITPYLKASNGEFLRDAAVDGLGIVLL
PAFIVYREIEHGALLPILTEYHYSQLAAYAIYPQTRHLSQRVRAFVDFLSKRFEVMPYWDSCLRHTKNIS
>Mature_310_residues
MDRFENMNTFAYIVEAGSISAAADRMDVAKSVISRRLKELEAHLGVQLFHRTTRQMKLTDSGRAFYEQSVRILADILEAE
HAVSQFHGALKGNLKVAVPLSFGLMHLGPAITAFLHTHPGIKFDLDFNDRQVDLLAEGFDLAIRIASLPDSSLIARHLAP
IQAVMCASPAYLEHMGMPQTPEELIRHRCLAYNLISNSDNWHVYDPAGQLIKTRITPYLKASNGEFLRDAAVDGLGIVLL
PAFIVYREIEHGALLPILTEYHYSQLAAYAIYPQTRHLSQRVRAFVDFLSKRFEVMPYWDSCLRHTKNIS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=34.8122866894198, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=31.9727891156463, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1789639, Length=300, Percent_Identity=30, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=30.2083333333333, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=30.952380952381, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787589, Length=300, Percent_Identity=27, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=25.7731958762887, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1789173, Length=277, Percent_Identity=27.4368231046931, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788706, Length=206, Percent_Identity=27.1844660194175, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790011, Length=299, Percent_Identity=23.4113712374582, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=25.4295532646048, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=22.4913494809689, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI157672245, Length=121, Percent_Identity=29.7520661157025, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787601, Length=120, Percent_Identity=27.5, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=254, Percent_Identity=25.5905511811024, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34960; Mature: 34960

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFENMNTFAYIVEAGSISAAADRMDVAKSVISRRLKELEAHLGVQLFHRTTRQMKLTD
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
SGRAFYEQSVRILADILEAEHAVSQFHGALKGNLKVAVPLSFGLMHLGPAITAFLHTHPG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC
IKFDLDFNDRQVDLLAEGFDLAIRIASLPDSSLIARHLAPIQAVMCASPAYLEHMGMPQT
EEEEECCCCCCHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PEELIRHRCLAYNLISNSDNWHVYDPAGQLIKTRITPYLKASNGEFLRDAAVDGLGIVLL
HHHHHHHHHHHHHEECCCCCEEEECCHHHHHHHHCCCEEECCCCCHHHHHHCCCCHHHHH
PAFIVYREIEHGALLPILTEYHYSQLAAYAIYPQTRHLSQRVRAFVDFLSKRFEVMPYWD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHCEECCCHH
SCLRHTKNIS
HHHHHHCCCC
>Mature Secondary Structure
MDRFENMNTFAYIVEAGSISAAADRMDVAKSVISRRLKELEAHLGVQLFHRTTRQMKLTD
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
SGRAFYEQSVRILADILEAEHAVSQFHGALKGNLKVAVPLSFGLMHLGPAITAFLHTHPG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC
IKFDLDFNDRQVDLLAEGFDLAIRIASLPDSSLIARHLAPIQAVMCASPAYLEHMGMPQT
EEEEECCCCCCHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PEELIRHRCLAYNLISNSDNWHVYDPAGQLIKTRITPYLKASNGEFLRDAAVDGLGIVLL
HHHHHHHHHHHHHEECCCCCEEEECCHHHHHHHHCCCEEECCCCCHHHHHHCCCCHHHHH
PAFIVYREIEHGALLPILTEYHYSQLAAYAIYPQTRHLSQRVRAFVDFLSKRFEVMPYWD
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHCEECCCHH
SCLRHTKNIS
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]