Click here to switch to the map view.

The map label for this gene is secB

Identifier: 114330673

GI number: 114330673

Start: 667360

End: 667842

Strand: Direct

Name: secB

Synonym: Neut_0658

Alternate gene names: 114330673

Gene position: 667360-667842 (Clockwise)

Preceding gene: 114330672

Following gene: 114330674

Centisome position: 25.08

GC content: 47.41

Gene sequence:

>483_bases
ATGACTGAACCACAGCAGCAGCCCGTTTTTGTTATTGAAAAAGTGTATGTCAAGGATTTATCACTGGAAATTCCCCATGC
TCCTCAGGTTTTTCTGGAACGGGAATCTCCCGAGATCAATCTTCAGCTGGCTACCAGTGATAATGTCATAGAAGGGGAGA
TCCACGAGGTAATTGTGACGGCGACTGTCACGGCGCGCCTGAAGGAAAAGGATAAGGTTATGTTTCTGGTAGAGGCTCAT
CAGGCTGGTATTTTCCGGATACGTAATGTTCCCGGGAATGAGATTGAGCCAGTATTGGGTGTTCTGTGTCCAAATATTCT
GTTTCCCTATCTGCGTGAAACGATCTCGGATACAGTAACGCGAGCTGGATTCCCGCCTGTGATTCTCAATCCGGTTAATT
TCGAGGCAATTTATCAGCAGAAGCAGCAGGAAGCGGCTGTATCACAGCCTGATCAGCCTGTGGATAATACAACCAGGCAC
TGA

Upstream 100 bases:

>100_bases
AGCTGGCCAGTCTGCTGGCTGGCTGAATGTCTGCCGGTATCTGATTGTTATTGGAAGCTGACTTATTTATTTTGATAAAT
GTATTTAACCGGAATCAACC

Downstream 100 bases:

>100_bases
TTCATGAGATTACAGCTATTTCGGGCCGGATTTGTTACCGCTGGCTTGTTGTTTCCATTGTTGTTTTTTTCCTGTAAGGC
CATTGCACAGGAAGGCAGTC

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MTEPQQQPVFVIEKVYVKDLSLEIPHAPQVFLERESPEINLQLATSDNVIEGEIHEVIVTATVTARLKEKDKVMFLVEAH
QAGIFRIRNVPGNEIEPVLGVLCPNILFPYLRETISDTVTRAGFPPVILNPVNFEAIYQQKQQEAAVSQPDQPVDNTTRH

Sequences:

>Translated_160_residues
MTEPQQQPVFVIEKVYVKDLSLEIPHAPQVFLERESPEINLQLATSDNVIEGEIHEVIVTATVTARLKEKDKVMFLVEAH
QAGIFRIRNVPGNEIEPVLGVLCPNILFPYLRETISDTVTRAGFPPVILNPVNFEAIYQQKQQEAAVSQPDQPVDNTTRH
>Mature_159_residues
TEPQQQPVFVIEKVYVKDLSLEIPHAPQVFLERESPEINLQLATSDNVIEGEIHEVIVTATVTARLKEKDKVMFLVEAHQ
AGIFRIRNVPGNEIEPVLGVLCPNILFPYLRETISDTVTRAGFPPVILNPVNFEAIYQQKQQEAAVSQPDQPVDNTTRH

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=138, Percent_Identity=42.7536231884058, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_NITEC (Q0AIA2)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_746895.1
- ProteinModelPortal:   Q0AIA2
- SMR:   Q0AIA2
- STRING:   Q0AIA2
- GeneID:   4273088
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_0658
- NMPDR:   fig|335283.3.peg.1774
- eggNOG:   COG1952
- HOGENOM:   HBG294212
- OMA:   GFPPLMI
- PhylomeDB:   Q0AIA2
- ProtClustDB:   PRK05751
- BioCyc:   NEUT335283:NEUT_0658-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 18036; Mature: 17905

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPQQQPVFVIEKVYVKDLSLEIPHAPQVFLERESPEINLQLATSDNVIEGEIHEVIVT
CCCCCCCCCCEEHHHHHHHCEEECCCCCCEEEECCCCCEEEEEECCCCEECCCHHEEEEE
ATVTARLKEKDKVMFLVEAHQAGIFRIRNVPGNEIEPVLGVLCPNILFPYLRETISDTVT
HHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RAGFPPVILNPVNFEAIYQQKQQEAAVSQPDQPVDNTTRH
HCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TEPQQQPVFVIEKVYVKDLSLEIPHAPQVFLERESPEINLQLATSDNVIEGEIHEVIVT
CCCCCCCCCEEHHHHHHHCEEECCCCCCEEEECCCCCEEEEEECCCCEECCCHHEEEEE
ATVTARLKEKDKVMFLVEAHQAGIFRIRNVPGNEIEPVLGVLCPNILFPYLRETISDTVT
HHHHHHHCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RAGFPPVILNPVNFEAIYQQKQQEAAVSQPDQPVDNTTRH
HCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA