Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 114330469

GI number: 114330469

Start: 459347

End: 459820

Strand: Direct

Name: yqgF [C]

Synonym: Neut_0449

Alternate gene names: 114330469

Gene position: 459347-459820 (Clockwise)

Preceding gene: 114330468

Following gene: 114330470

Centisome position: 17.26

GC content: 45.99

Gene sequence:

>474_bases
ATGCCTGATTCTGCCGAAGAAACTATATCTGACATGGCAAGCGTTATTTTATCCGGCACTGTGCTTGCTTTCGATTTTGG
TGTGCGACGTATAGGGGTGGCTATTGGCGAATATGAATTGCGATTAGCTCATCCTTTGATGACAATTGATCAGGCGATGA
CTAAGCCCCGTTTTGAAAAGATTGCCGAATTAATCGAGACATGGCAACCGGTTTTGCTGGTGGTGGGGTTATCGGTTCAT
GCTGATGGTGCTGAACATGAGATAACCCGATTATGCCAACGTTTTGCGAGGCGACTGGAAGGACGATTCGGAATTCCAGT
GGTGATGGAAGACGAGCGTTATACGACAGCGATTGCTCGTTTAACGTTGGAAGAAGTAGGCATTACAGGCAGAAAACAGC
GGCCAATGCTTGATCAGATTGCAGCACAACATATCCTTCAAACTTTCTTTGATTCATCTCATGCAGCTTCCTGA

Upstream 100 bases:

>100_bases
CAATCCCGGATATTGTTTGAACTCTCTTTTGAAGAGCGACTACCTGCTGCCATGAAATTGCTGGGGATTGATTTTTTCAA
TTTGTCCAATGAAGTTGGTC

Downstream 100 bases:

>100_bases
TGCCGAACAGCTACTGACACTGCTTATCGAAAAAATCCGATTGGATGTCACTGATAAAACGACTATTGTGGGTATTCATA
CCGGGGGGGCCTGGCTGGCT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MPDSAEETISDMASVILSGTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEKIAELIETWQPVLLVVGLSVH
ADGAEHEITRLCQRFARRLEGRFGIPVVMEDERYTTAIARLTLEEVGITGRKQRPMLDQIAAQHILQTFFDSSHAAS

Sequences:

>Translated_157_residues
MPDSAEETISDMASVILSGTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEKIAELIETWQPVLLVVGLSVH
ADGAEHEITRLCQRFARRLEGRFGIPVVMEDERYTTAIARLTLEEVGITGRKQRPMLDQIAAQHILQTFFDSSHAAS
>Mature_156_residues
PDSAEETISDMASVILSGTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEKIAELIETWQPVLLVVGLSVHA
DGAEHEITRLCQRFARRLEGRFGIPVVMEDERYTTAIARLTLEEVGITGRKQRPMLDQIAAQHILQTFFDSSHAAS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=138, Percent_Identity=38.4057971014493, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_NITEC (Q0AIU5)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_746691.1
- ProteinModelPortal:   Q0AIU5
- SMR:   Q0AIU5
- STRING:   Q0AIU5
- GeneID:   4271913
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_0449
- NMPDR:   fig|335283.3.peg.1156
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ACVILEQ
- PhylomeDB:   Q0AIU5
- ProtClustDB:   PRK00109
- BioCyc:   NEUT335283:NEUT_0449-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17535; Mature: 17404

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSAEETISDMASVILSGTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IAELIETWQPVLLVVGLSVHADGAEHEITRLCQRFARRLEGRFGIPVVMEDERYTTAIAR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
LTLEEVGITGRKQRPMLDQIAAQHILQTFFDSSHAAS
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PDSAEETISDMASVILSGTVLAFDFGVRRIGVAIGEYELRLAHPLMTIDQAMTKPRFEK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IAELIETWQPVLLVVGLSVHADGAEHEITRLCQRFARRLEGRFGIPVVMEDERYTTAIAR
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
LTLEEVGITGRKQRPMLDQIAAQHILQTFFDSSHAAS
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA