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The map label for this gene is 114330424

Identifier: 114330424

GI number: 114330424

Start: 410192

End: 411232

Strand: Reverse

Name: 114330424

Synonym: Neut_0403

Alternate gene names: NA

Gene position: 411232-410192 (Counterclockwise)

Preceding gene: 114330425

Following gene: 114330418

Centisome position: 15.45

GC content: 46.01

Gene sequence:

>1041_bases
ATGTCGGATATCACCACACTCGACGATGCGCGCTACCAGGAATTCATTCTACAAGGCGTATCACGCACTTTCGCGCTCAC
TATTCCTCAATTGCCGCCAGCATTGCGTGCAGTGATAGGAAATGCCTATCTGTTATGTCGCATTGTCGATACAGTTGAGG
ATGATAGCGCCCTCACATTGGAGCAAACACGCGAACTGGCTGGAATGTTCACCGAGGTCGTCAGCGGTAGCATCGAAGCT
GAAATTTTTGCACAAGCCCTGTACCCTCTACTTTCAGAACACACTATTCCAGCAGAGCATGATCTCATCAAGAATACCCC
TGCCGTCATACGAATGACACACAGCTTCAATTCTGTGCAGCGCCAGGCGCTGGAACGCTGTATTCGTATCATGGGGCAAG
GAATGGCCGCATATCAGGAAAAAGAATCTTTGGCAGGCCTTGAAAACCTGGCCGAGATGGATCTTTATTGCTACCACGTT
GCCGGTGTGGTTGGTGAAATGCTGACTGAATTATTCTGTGATTACTCCCCAGAAATCAATCAACATAAATCGACCCTGAT
GAAACTGGCTGTATCTTTTGGTCAGGGATTACAGATGACCAATATTCTGAAAGATATCTGGGAAGACAGAAAACGAGGGG
CATGCTGGTTACCAAGAGATATTTTTCTGGAAGAAGGGTTTGATCTCGATAATTTACAACCAGGCCGTTGCGCGCAAGGT
TTTCATGATGGACTGGGTACCCTGATTGGTATTGCAAAATCACATCTGCACAACGCGATGATCTACACCCGCCTGATCCC
ATCGCATGAAACAGGGATACGCCGCTTCTGTCTGTGGGCAATAGGTATGGCTGTACTTACTTTAAATAAAATTAATAACA
AGCGTAATTTTACTGCTGGGGTACAGGTAAAAATTTCTCGCAGGAGCGTCAAAGCAACCGTTTTAATCACCAGCCTTCTG
GCCAGTCAGGATTGGGCACTTAGAAAGGTTTTTTCAATATCTTCCAGAAAGCTGCCGGAAGTACAAATTACTGAATTATA
A

Upstream 100 bases:

>100_bases
GGACGGCAGCTCAGTACATCTCATTCGTGCACGTGAAACAATAGAAGATCTATATGCTCTGGAAAAGATACCAACCTGAA
ACCCGCACATAACTCCAATT

Downstream 100 bases:

>100_bases
AGCCGAAACAATCTCGTCATTAAATCGCTGAAGCGCTTTAAGCGGATCTGGTGACCGGGTAATCGGCCTGCCTATAACAA
GGTAGCTAGCCCCGTTCCGT

Product: squalene/phytoene synthase

Products: NA

Alternate protein names: Farnesyl-Diphosphate Farnesyltransferase; Squalene Synthase; Squalene/Phytoene Synthase Family Protein; Squalene And Phytoene Synthase; Squalene Synthetase; Phytoene/Squalene Synthetase Family Protein; Squalene/Phytoene Synthase-Like Protein; Phytoene Synthase; Phytoene/Squalene Synthetase; SQS PSY Squalene/Phytoene Synthase-Like Protein; Squalene And Phytoene Synthases

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MSDITTLDDARYQEFILQGVSRTFALTIPQLPPALRAVIGNAYLLCRIVDTVEDDSALTLEQTRELAGMFTEVVSGSIEA
EIFAQALYPLLSEHTIPAEHDLIKNTPAVIRMTHSFNSVQRQALERCIRIMGQGMAAYQEKESLAGLENLAEMDLYCYHV
AGVVGEMLTELFCDYSPEINQHKSTLMKLAVSFGQGLQMTNILKDIWEDRKRGACWLPRDIFLEEGFDLDNLQPGRCAQG
FHDGLGTLIGIAKSHLHNAMIYTRLIPSHETGIRRFCLWAIGMAVLTLNKINNKRNFTAGVQVKISRRSVKATVLITSLL
ASQDWALRKVFSISSRKLPEVQITEL

Sequences:

>Translated_346_residues
MSDITTLDDARYQEFILQGVSRTFALTIPQLPPALRAVIGNAYLLCRIVDTVEDDSALTLEQTRELAGMFTEVVSGSIEA
EIFAQALYPLLSEHTIPAEHDLIKNTPAVIRMTHSFNSVQRQALERCIRIMGQGMAAYQEKESLAGLENLAEMDLYCYHV
AGVVGEMLTELFCDYSPEINQHKSTLMKLAVSFGQGLQMTNILKDIWEDRKRGACWLPRDIFLEEGFDLDNLQPGRCAQG
FHDGLGTLIGIAKSHLHNAMIYTRLIPSHETGIRRFCLWAIGMAVLTLNKINNKRNFTAGVQVKISRRSVKATVLITSLL
ASQDWALRKVFSISSRKLPEVQITEL
>Mature_345_residues
SDITTLDDARYQEFILQGVSRTFALTIPQLPPALRAVIGNAYLLCRIVDTVEDDSALTLEQTRELAGMFTEVVSGSIEAE
IFAQALYPLLSEHTIPAEHDLIKNTPAVIRMTHSFNSVQRQALERCIRIMGQGMAAYQEKESLAGLENLAEMDLYCYHVA
GVVGEMLTELFCDYSPEINQHKSTLMKLAVSFGQGLQMTNILKDIWEDRKRGACWLPRDIFLEEGFDLDNLQPGRCAQGF
HDGLGTLIGIAKSHLHNAMIYTRLIPSHETGIRRFCLWAIGMAVLTLNKINNKRNFTAGVQVKISRRSVKATVLITSLLA
SQDWALRKVFSISSRKLPEVQITEL

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI67089147, Length=294, Percent_Identity=24.8299319727891, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321984, Length=326, Percent_Identity=27.3006134969325, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38758; Mature: 38627

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDITTLDDARYQEFILQGVSRTFALTIPQLPPALRAVIGNAYLLCRIVDTVEDDSALTL
CCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHCCHHEEEHHHHHCCCCCCEEH
EQTRELAGMFTEVVSGSIEAEIFAQALYPLLSEHTIPAEHDLIKNTPAVIRMTHSFNSVQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEHHHHHHHH
RQALERCIRIMGQGMAAYQEKESLAGLENLAEMDLYCYHVAGVVGEMLTELFCDYSPEIN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
QHKSTLMKLAVSFGQGLQMTNILKDIWEDRKRGACWLPRDIFLEEGFDLDNLQPGRCAQG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHH
FHDGLGTLIGIAKSHLHNAMIYTRLIPSHETGIRRFCLWAIGMAVLTLNKINNKRNFTAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VQVKISRRSVKATVLITSLLASQDWALRKVFSISSRKLPEVQITEL
EEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCC
>Mature Secondary Structure 
SDITTLDDARYQEFILQGVSRTFALTIPQLPPALRAVIGNAYLLCRIVDTVEDDSALTL
CCCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHCCHHEEEHHHHHCCCCCCEEH
EQTRELAGMFTEVVSGSIEAEIFAQALYPLLSEHTIPAEHDLIKNTPAVIRMTHSFNSVQ
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEHHHHHHHH
RQALERCIRIMGQGMAAYQEKESLAGLENLAEMDLYCYHVAGVVGEMLTELFCDYSPEIN
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
QHKSTLMKLAVSFGQGLQMTNILKDIWEDRKRGACWLPRDIFLEEGFDLDNLQPGRCAQG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHH
FHDGLGTLIGIAKSHLHNAMIYTRLIPSHETGIRRFCLWAIGMAVLTLNKINNKRNFTAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VQVKISRRSVKATVLITSLLASQDWALRKVFSISSRKLPEVQITEL
EEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA