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The map label for this gene is ycbZ [H]

Identifier: 114330228

GI number: 114330228

Start: 199720

End: 202173

Strand: Reverse

Name: ycbZ [H]

Synonym: Neut_0199

Alternate gene names: 114330228

Gene position: 202173-199720 (Counterclockwise)

Preceding gene: 114330229

Following gene: 114330225

Centisome position: 7.6

GC content: 45.93

Gene sequence:

>2454_bases
ATGCCAATAACCAGATTAGAGCCGTATGCGCTCAGTTTAACGATTGATCCCGGTTCTCTGGAATTCTCAGATACATCTAC
TTTGATTGATCAACCACTTGACTGGATTGGTCAGGAACGTGCCAGGCGGGCAACTTATTTTGGCCTCGAAATGGAACACC
CGGACTACAACCTTTTTGTATTGGGCGAAACGGGCAGTGGCAGATCTTCCCTGCTGCGACAGGCGATGACAGAAGTTGCA
GCAGGGAAGCCTGTACCATCTGATTTGTGCTACGTCTACAACTTTGATGTGCCGGAACGACCTCTGACATTACGCTTACC
AGCAGGCAAAGGTAGCTGGCTACGGCAACAACTTGCACAATCCATGAGCGATTTATTGCAGGAAATACCGGAACGGCTGA
ATAGAGATGATTTCAAGGCAGAAGCGGAGCACATTGAAAACCGCTTCAAGCTGGAAGAAAGCAATTATTTTGAAAAACTC
AATATATATGCAGAATCATTAAAATTTGCAATTCGGCGTGAATCTGGACGCCTGGTTTTTACGCTTTTAAATGAATCCGG
AAAGCCACTGACCGAAGAAGAAATCTTGACGCTACCGAGAGACCGGAGAGCTGCTCTCGATCAGGACGAACAAGCACTAC
GCCATGAAATTGCATCTTATCTCCAAAAAATTCGTATGCTTGGCCAAAACCGGGATAAGGAGCTCTCCACATTATGTCGG
AATTGGATTGAACCTCTGCTAAATCAGGTATTGGATGCCGTACCGGGCGAACTGGACCGATCCTTTAAAGATTATGCCAG
GCTTGAACACCACTTGAACGGGATCAAACACGATATTCTTGAAAACCTGGATATATTCCAGCCAGCTGATTTAGATGAAG
AAAAGAGCCCAGAAGATCTAAAGGAGTTGTTTGAGCGCTACCGGGTAAATATCGTAGTAGACAACCGAGATTCAATCAGC
GCACCGGTTGTGGTCGATGACAATCCATCTTTTAAATCGATGATTGGCAGTATCGGGTACCAATCCATTGAAGGTATGCT
GGTGACAGATTTTACGCGTATCCGCGCAGGCAGTTTGTTGAAGGCGCATGGTGGCTTCCTGATGTTACATTTGGATGATT
TACTGGTTGATACTTTCTTGTGGGAAAAAATTTGTCGCTTTCTGCGTAACCACATATTGCAGATTGAAGAATCCTGGACT
GCTAATGCCGCAACACCGGTCATACCCATTGAACCTGAATCTGTCAAGATTGATGTCAGAATCATCCTGATTGGCTCGCG
TGAGCAATATTACACAATTCAGGAAGAAAATCCCGAACTAGCGCGGCGATTCCGGGTAAAAGTTGATTTTGCAGTCTCAT
TCCTGGCCAGTATACAAGCCTACCGGGCTCTGTCTATTTTTATATCCCATCTCTGTAAACAATCCTCTCTGCCACATTTT
TCACGCGGAGCGGTTGCTTGTGTGCTAAAAACCTGCCACAGAACCACAGAAGACCAGAAGCGATTAAGTGCAAACTTCAG
TTATACAGAAATGCTGGTTGTGGAAAGCGCCCTGCAATGCAAAGCGCGCGGAAATACTATTGTTGAGGAGCGAGATGTTA
CAACTGCCCGCCAGGCTCGGACACTGCGACATAATTACCCGGACCAATGTGCACAAGAAGCTATTGCTGACGGAGATATA
GTCATCACCGTACATGGTGAAAAAGTCGGGCAGATCAATGGTTTGAGCTTGATCGAGATGGGTGATCACAGTTTCGGTAT
TCCTACACGCATTACTGCGCACACCTTGGCTGGAGAAGACGGTCTGCTCAATATTGAACGTGAAGTCGGCATGTCCGGGC
CGATCCACGATAAAGGCGTATTCATCCTACAAAATTTTCTATCCGCTTTGTTTCACCATAATGCACCGCTCGCACTCAAT
GCATCTATCGTGTTTGAACAGGAATACTATGGCGTAGAAGGCGATTCTGCTTCATGCGCGGAATTGTATGCACTACTTTC
AGCCTTGTCGGGATTACCGTTCAAACAAGGTATCGCAGTCACTGGTGCGATCAATCAATTTGGTGAAATGCTCCCGGTAG
GAGGCATTAATGAAAAAATAGAAGGATTTTTCAGGGTTTGTGAAACTGCCGGTCTTGATGGTACTCAAGGAGTGCTGATC
CCGGATCGCAATTGCCGTCACCTGATACTGGATGATAGTGTAATTAATGCGGTATCCAAAGGTATGTTCCACATTTACGC
TATCGATCATATGTATGATGGCCTGGAATTACTATCCGGCTTTCCTGCCGGAATCAGTGATGATGTCGAGCCACGCGAAA
TTATCAATTATCCACAGGATACCGTTCTGAACCACGCACAAAAAGCATTACGCGCTTACCGCATGGCTTGCCATCAGCAA
CCACAACGCACAAAAATATCCTCTAAACGACCAAGCGAACATCCAGAAAAATAA

Upstream 100 bases:

>100_bases
TCGCCCTGCCTGAAGCACGTATCCTTACCAGCTTCCAGTATCGAACAATACTGAGAATATCCGGTAATCTTCAAATTCCC
CTAGTCCTACAATAGCCCAT

Downstream 100 bases:

>100_bases
TTCTTCTACTACCTTGATTACACTAATTTTTCGGCTTTTTTACTAAAAATAAACAAGAAGAATCAAAGTAATGCATTAAT
TTCCAGCAAATCATCTTCAT

Product: putative ATP-dependent protease La, putative

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 817; Mature: 816

Protein sequence:

>817_residues
MPITRLEPYALSLTIDPGSLEFSDTSTLIDQPLDWIGQERARRATYFGLEMEHPDYNLFVLGETGSGRSSLLRQAMTEVA
AGKPVPSDLCYVYNFDVPERPLTLRLPAGKGSWLRQQLAQSMSDLLQEIPERLNRDDFKAEAEHIENRFKLEESNYFEKL
NIYAESLKFAIRRESGRLVFTLLNESGKPLTEEEILTLPRDRRAALDQDEQALRHEIASYLQKIRMLGQNRDKELSTLCR
NWIEPLLNQVLDAVPGELDRSFKDYARLEHHLNGIKHDILENLDIFQPADLDEEKSPEDLKELFERYRVNIVVDNRDSIS
APVVVDDNPSFKSMIGSIGYQSIEGMLVTDFTRIRAGSLLKAHGGFLMLHLDDLLVDTFLWEKICRFLRNHILQIEESWT
ANAATPVIPIEPESVKIDVRIILIGSREQYYTIQEENPELARRFRVKVDFAVSFLASIQAYRALSIFISHLCKQSSLPHF
SRGAVACVLKTCHRTTEDQKRLSANFSYTEMLVVESALQCKARGNTIVEERDVTTARQARTLRHNYPDQCAQEAIADGDI
VITVHGEKVGQINGLSLIEMGDHSFGIPTRITAHTLAGEDGLLNIEREVGMSGPIHDKGVFILQNFLSALFHHNAPLALN
ASIVFEQEYYGVEGDSASCAELYALLSALSGLPFKQGIAVTGAINQFGEMLPVGGINEKIEGFFRVCETAGLDGTQGVLI
PDRNCRHLILDDSVINAVSKGMFHIYAIDHMYDGLELLSGFPAGISDDVEPREIINYPQDTVLNHAQKALRAYRMACHQQ
PQRTKISSKRPSEHPEK

Sequences:

>Translated_817_residues
MPITRLEPYALSLTIDPGSLEFSDTSTLIDQPLDWIGQERARRATYFGLEMEHPDYNLFVLGETGSGRSSLLRQAMTEVA
AGKPVPSDLCYVYNFDVPERPLTLRLPAGKGSWLRQQLAQSMSDLLQEIPERLNRDDFKAEAEHIENRFKLEESNYFEKL
NIYAESLKFAIRRESGRLVFTLLNESGKPLTEEEILTLPRDRRAALDQDEQALRHEIASYLQKIRMLGQNRDKELSTLCR
NWIEPLLNQVLDAVPGELDRSFKDYARLEHHLNGIKHDILENLDIFQPADLDEEKSPEDLKELFERYRVNIVVDNRDSIS
APVVVDDNPSFKSMIGSIGYQSIEGMLVTDFTRIRAGSLLKAHGGFLMLHLDDLLVDTFLWEKICRFLRNHILQIEESWT
ANAATPVIPIEPESVKIDVRIILIGSREQYYTIQEENPELARRFRVKVDFAVSFLASIQAYRALSIFISHLCKQSSLPHF
SRGAVACVLKTCHRTTEDQKRLSANFSYTEMLVVESALQCKARGNTIVEERDVTTARQARTLRHNYPDQCAQEAIADGDI
VITVHGEKVGQINGLSLIEMGDHSFGIPTRITAHTLAGEDGLLNIEREVGMSGPIHDKGVFILQNFLSALFHHNAPLALN
ASIVFEQEYYGVEGDSASCAELYALLSALSGLPFKQGIAVTGAINQFGEMLPVGGINEKIEGFFRVCETAGLDGTQGVLI
PDRNCRHLILDDSVINAVSKGMFHIYAIDHMYDGLELLSGFPAGISDDVEPREIINYPQDTVLNHAQKALRAYRMACHQQ
PQRTKISSKRPSEHPEK
>Mature_816_residues
PITRLEPYALSLTIDPGSLEFSDTSTLIDQPLDWIGQERARRATYFGLEMEHPDYNLFVLGETGSGRSSLLRQAMTEVAA
GKPVPSDLCYVYNFDVPERPLTLRLPAGKGSWLRQQLAQSMSDLLQEIPERLNRDDFKAEAEHIENRFKLEESNYFEKLN
IYAESLKFAIRRESGRLVFTLLNESGKPLTEEEILTLPRDRRAALDQDEQALRHEIASYLQKIRMLGQNRDKELSTLCRN
WIEPLLNQVLDAVPGELDRSFKDYARLEHHLNGIKHDILENLDIFQPADLDEEKSPEDLKELFERYRVNIVVDNRDSISA
PVVVDDNPSFKSMIGSIGYQSIEGMLVTDFTRIRAGSLLKAHGGFLMLHLDDLLVDTFLWEKICRFLRNHILQIEESWTA
NAATPVIPIEPESVKIDVRIILIGSREQYYTIQEENPELARRFRVKVDFAVSFLASIQAYRALSIFISHLCKQSSLPHFS
RGAVACVLKTCHRTTEDQKRLSANFSYTEMLVVESALQCKARGNTIVEERDVTTARQARTLRHNYPDQCAQEAIADGDIV
ITVHGEKVGQINGLSLIEMGDHSFGIPTRITAHTLAGEDGLLNIEREVGMSGPIHDKGVFILQNFLSALFHHNAPLALNA
SIVFEQEYYGVEGDSASCAELYALLSALSGLPFKQGIAVTGAINQFGEMLPVGGINEKIEGFFRVCETAGLDGTQGVLIP
DRNCRHLILDDSVINAVSKGMFHIYAIDHMYDGLELLSGFPAGISDDVEPREIINYPQDTVLNHAQKALRAYRMACHQQP
QRTKISSKRPSEHPEK

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=412, Percent_Identity=34.9514563106796, Blast_Score=235, Evalue=8e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 92077; Mature: 91946

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPITRLEPYALSLTIDPGSLEFSDTSTLIDQPLDWIGQERARRATYFGLEMEHPDYNLFV
CCCCCCCCEEEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHEEEEEECCCCCEEEE
LGETGSGRSSLLRQAMTEVAAGKPVPSDLCYVYNFDVPERPLTLRLPAGKGSWLRQQLAQ
EECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHH
SMSDLLQEIPERLNRDDFKAEAEHIENRFKLEESNYFEKLNIYAESLKFAIRRESGRLVF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCEEE
TLLNESGKPLTEEEILTLPRDRRAALDQDEQALRHEIASYLQKIRMLGQNRDKELSTLCR
EEECCCCCCCCHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NWIEPLLNQVLDAVPGELDRSFKDYARLEHHLNGIKHDILENLDIFQPADLDEEKSPEDL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
KELFERYRVNIVVDNRDSISAPVVVDDNPSFKSMIGSIGYQSIEGMLVTDFTRIRAGSLL
HHHHHHCEEEEEEECCCCCCCCEEECCCCCHHHHHHHCCHHHHCCEEEEHHHHHHCCCEE
KAHGGFLMLHLDDLLVDTFLWEKICRFLRNHILQIEESWTANAATPVIPIEPESVKIDVR
ECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCCCCCCCEEECCCCCEEEEEE
IILIGSREQYYTIQEENPELARRFRVKVDFAVSFLASIQAYRALSIFISHLCKQSSLPHF
EEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SRGAVACVLKTCHRTTEDQKRLSANFSYTEMLVVESALQCKARGNTIVEERDVTTARQAR
CCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHH
TLRHNYPDQCAQEAIADGDIVITVHGEKVGQINGLSLIEMGDHSFGIPTRITAHTLAGED
HHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCC
GLLNIEREVGMSGPIHDKGVFILQNFLSALFHHNAPLALNASIVFEQEYYGVEGDSASCA
CCEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHCCCCCCCCHHH
ELYALLSALSGLPFKQGIAVTGAINQFGEMLPVGGINEKIEGFFRVCETAGLDGTQGVLI
HHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
PDRNCRHLILDDSVINAVSKGMFHIYAIDHMYDGLELLSGFPAGISDDVEPREIINYPQD
CCCCCCEEEECHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHH
TVLNHAQKALRAYRMACHQQPQRTKISSKRPSEHPEK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PITRLEPYALSLTIDPGSLEFSDTSTLIDQPLDWIGQERARRATYFGLEMEHPDYNLFV
CCCCCCCEEEEEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHEEEEEECCCCCEEEE
LGETGSGRSSLLRQAMTEVAAGKPVPSDLCYVYNFDVPERPLTLRLPAGKGSWLRQQLAQ
EECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHH
SMSDLLQEIPERLNRDDFKAEAEHIENRFKLEESNYFEKLNIYAESLKFAIRRESGRLVF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCEEE
TLLNESGKPLTEEEILTLPRDRRAALDQDEQALRHEIASYLQKIRMLGQNRDKELSTLCR
EEECCCCCCCCHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NWIEPLLNQVLDAVPGELDRSFKDYARLEHHLNGIKHDILENLDIFQPADLDEEKSPEDL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
KELFERYRVNIVVDNRDSISAPVVVDDNPSFKSMIGSIGYQSIEGMLVTDFTRIRAGSLL
HHHHHHCEEEEEEECCCCCCCCEEECCCCCHHHHHHHCCHHHHCCEEEEHHHHHHCCCEE
KAHGGFLMLHLDDLLVDTFLWEKICRFLRNHILQIEESWTANAATPVIPIEPESVKIDVR
ECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCCCCCCCEEECCCCCEEEEEE
IILIGSREQYYTIQEENPELARRFRVKVDFAVSFLASIQAYRALSIFISHLCKQSSLPHF
EEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SRGAVACVLKTCHRTTEDQKRLSANFSYTEMLVVESALQCKARGNTIVEERDVTTARQAR
CCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHH
TLRHNYPDQCAQEAIADGDIVITVHGEKVGQINGLSLIEMGDHSFGIPTRITAHTLAGED
HHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCC
GLLNIEREVGMSGPIHDKGVFILQNFLSALFHHNAPLALNASIVFEQEYYGVEGDSASCA
CCEEEHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEHHHCCCCCCCCHHH
ELYALLSALSGLPFKQGIAVTGAINQFGEMLPVGGINEKIEGFFRVCETAGLDGTQGVLI
HHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
PDRNCRHLILDDSVINAVSKGMFHIYAIDHMYDGLELLSGFPAGISDDVEPREIINYPQD
CCCCCCEEEECHHHHHHHHCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHH
TVLNHAQKALRAYRMACHQQPQRTKISSKRPSEHPEK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]