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The map label for this gene is vqsM [H]

Identifier: 113969813

GI number: 113969813

Start: 1721359

End: 1722378

Strand: Direct

Name: vqsM [H]

Synonym: Shewmr4_1471

Alternate gene names: 113969813

Gene position: 1721359-1722378 (Clockwise)

Preceding gene: 113969812

Following gene: 113969817

Centisome position: 36.58

GC content: 49.31

Gene sequence:

>1020_bases
ATGTTACAGCGCGTCGACTACAAGACGAACCTGATGGTGGGTGATCAAACCTATCCCGCATTTGAGCTACGTAATATTCT
CGATTTTATTGCCTCGCAGTTAGGCGAAAACGCCTTACAGCAAGTCTGTGAGCATATCGGCGTTGGCCTAGCAGAACTCA
ATCATTGCCAGTTTGTGTTTGTGTGGCAGGTAGAATATGCGATGGAGTTTTTACGTTTGCAGGGCGGTGACCCCGATATT
GGCACTAAATTAGGCCTAAGCTATCGGGTGAGTAGTTTAGATGTGCTCTTGCCCCATCTTGCGCAGTTGACTTCTCTACA
GGCCTGCCTGCAGTTTGTGGTCAATCATCCCCAACTAGTTGGCAGTTTTACCGATACCTTAGTGCGCCTCGAAGAAGACT
GTGTCTGCATTCGTTGGCTCAATACTGGCCGTATCGACAAAGCACAATATGGATTTCAATTTCTGCACAGCATAGGTTCG
CTGTTAGGGCTGGCGAGAGAGCTCACGGGGGAGGCGATAACGCTTAGGCAAATCCATTTGGCGGAACCTGTCCGCGATGA
GCGTTTTTTAACCCAGGCAACGGGGGCTAGGGTGCAGTTTAATTGCGAATATTATGAATGGAGCATTTCCCTCAACCAAC
TCGCGCTTGCCATCCAGTATCCTTTCCCTGCCTACGCCGAAAAGACCGCTTCGGTATCAACCACATCCTTTATCGAAACC
GTACTGGCGGCAATCAACGAGCATTTTCCCCAAGTGCTTCATTTAGATGACATGGCGACGCAACTACATATGAGCGATCG
CAGCTTTCGGCGTAAGCTGGCACAGCTTGGCTCGAGTTACCAACGTTTAGTCGATCAGGTGCGTTGCCAAAGGGCGGTCG
AGTTGATTTTAGCTAACGAGTTGGATATTGAGGCGATTGCCGAGACCTTAGGCTACAGCGATGTTAGCCATTTCCGTCAA
TCTTTTAAGCATTGGATTGGCCATCCGCCTGGGTATTTTAGCCGGCTAAATGTTGGGTAA

Upstream 100 bases:

>100_bases
AACATTAAGTTTGGTTTAAGACTATTCAAAATAAGCAAGATCTTATACAACTAATCACCTAGGGAATTAAAAGCTGAACA
AATCATATTAAGGATTTTCC

Downstream 100 bases:

>100_bases
AGGGAAGAGTGAAAGCGCTAATTAACAATTAACGCTTTGGTCTGTCGTCAAATATCACTCACACTCACTTTAAAGAACTT
GGTTTTTTCGGATAGTTGTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Virulence and quorum sensing modulator protein [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGLAELNHCQFVFVWQVEYAMEFLRLQGGDPDI
GTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLVGSFTDTLVRLEEDCVCIRWLNTGRIDKAQYGFQFLHSIGS
LLGLARELTGEAITLRQIHLAEPVRDERFLTQATGARVQFNCEYYEWSISLNQLALAIQYPFPAYAEKTASVSTTSFIET
VLAAINEHFPQVLHLDDMATQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILANELDIEAIAETLGYSDVSHFRQ
SFKHWIGHPPGYFSRLNVG

Sequences:

>Translated_339_residues
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGLAELNHCQFVFVWQVEYAMEFLRLQGGDPDI
GTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLVGSFTDTLVRLEEDCVCIRWLNTGRIDKAQYGFQFLHSIGS
LLGLARELTGEAITLRQIHLAEPVRDERFLTQATGARVQFNCEYYEWSISLNQLALAIQYPFPAYAEKTASVSTTSFIET
VLAAINEHFPQVLHLDDMATQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILANELDIEAIAETLGYSDVSHFRQ
SFKHWIGHPPGYFSRLNVG
>Mature_339_residues
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGLAELNHCQFVFVWQVEYAMEFLRLQGGDPDI
GTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLVGSFTDTLVRLEEDCVCIRWLNTGRIDKAQYGFQFLHSIGS
LLGLARELTGEAITLRQIHLAEPVRDERFLTQATGARVQFNCEYYEWSISLNQLALAIQYPFPAYAEKTASVSTTSFIET
VLAAINEHFPQVLHLDDMATQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILANELDIEAIAETLGYSDVSHFRQ
SFKHWIGHPPGYFSRLNVG

Specific function: Transcriptional regulator involved in both the repression (at least 99 genes, such as mexR and algU) and in the activation (at least 203 genes, such as mvfR, rsaL, vqsR and rpoS) of regulatory or putative regulatory proteins which are implicated in quorum

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38442; Mature: 38442

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGLAELNHCQFVF
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHCCCCEEEE
VWQVEYAMEFLRLQGGDPDIGTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLV
EEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
GSFTDTLVRLEEDCVCIRWLNTGRIDKAQYGFQFLHSIGSLLGLARELTGEAITLRQIHL
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHH
AEPVRDERFLTQATGARVQFNCEYYEWSISLNQLALAIQYPFPAYAEKTASVSTTSFIET
CCCCHHHHHHHHCCCCEEEEEEEEEEEEEEHHHEEEEEECCCCHHHHHHCCCHHHHHHHH
VLAAINEHFPQVLHLDDMATQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILANE
HHHHHHHHCHHHEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDIEAIAETLGYSDVSHFRQSFKHWIGHPPGYFSRLNVG
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGLAELNHCQFVF
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHCCCCEEEE
VWQVEYAMEFLRLQGGDPDIGTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLV
EEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
GSFTDTLVRLEEDCVCIRWLNTGRIDKAQYGFQFLHSIGSLLGLARELTGEAITLRQIHL
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHH
AEPVRDERFLTQATGARVQFNCEYYEWSISLNQLALAIQYPFPAYAEKTASVSTTSFIET
CCCCHHHHHHHHCCCCEEEEEEEEEEEEEEHHHEEEEEECCCCHHHHHHCCCHHHHHHHH
VLAAINEHFPQVLHLDDMATQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILANE
HHHHHHHHCHHHEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDIEAIAETLGYSDVSHFRQSFKHWIGHPPGYFSRLNVG
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]