| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is iorB [H]
Identifier: 113969782
GI number: 113969782
Start: 1684307
End: 1686553
Strand: Direct
Name: iorB [H]
Synonym: Shewmr4_1440
Alternate gene names: 113969782
Gene position: 1684307-1686553 (Clockwise)
Preceding gene: 113969781
Following gene: 113969783
Centisome position: 35.79
GC content: 53.67
Gene sequence:
>2247_bases ATGAGTACATTCACCGCAGTTGAAAATATCAGTCGCCGCGATGTGTTAAAACTCTTCGGCGCCGTTGGGGGCGGTCTCGC CCTTGGCGCCAGTGGCCTCAGTTGGAGCCCAATGGCATTGGCACAGGACCAACAGGCGCGGCTCAATCTGTTTATCGCCA TCGGTGAGGATGACAAGGTCTATTTGACCTGCCATCGCTCCGAAATGGGTCAGGGGATCCGCACGGGGATTTTACAAATC TTGGCCGAAGAACTGGAGGCCGATTGGGATAAAATTGTGCCTATTCAAGGACTCGCCGATAAACGCTACGCCAGCCAAAA TACCGATGGTAGCCGCAGTATCCGCGAAAACTATGATCGCATGCGAGAGATGGGCGCGATGGCTCGAACCATGCTTGAAC AAGCCGCTGCAGCCCGCTGGAAAGTCCCCGTGAGTGAAGTGCAGGCTAAAGATCATCAAGTGCTGCATGCTAAATCTGGC CGTGCTGCGCGCTTTGGTGAATTAGCCCTTGATGCGGCGGGATTACCACTGCCCGCGGCCGATTCACTGCGATTAAAGGC GGTTAAGGATTTTAAGCAAATTGGTGCTTCGCGTCAGATAGTCGATATGCAGGCCATGCTCACGGGTAAGGCTGTCTATG GCTATGATATTCAAGTGGATAACATGCTTTATGCCAGCATTATGCGCCCACCCGTATTGGGGAGCGATGTCGCAAGTCTT GACGATAGTGCGGCGCGCAAAGTAGCGGGTGTGGTCGATGTGTTCCGTATGCCTACGCCCAAGGGCGCTCCTGCTTTTCA AGCCTTAGGCGGCGTAGCTGTGGTGGCGACAAATACTTGGAGTGCGCTGCAGGGACGTAAAGCCTTGCAAGTGAGCTGGA CTGAGTCAACCAACAGCAGTCACGATTCTAAAACCTACCTTAAAGAGCTGGTGGACAAGGTACAAGCCCCTGGCAAGGTG GTACGTCAAGTTGGTGATGAGGTCAAAGCGTGGCCAAAGGATGATACCCTTAAGGCGATTTATACCGTGCCTTACCTTAT CCATTCCTCCATCGAGCCGCCGGTGGCCACCGCCAATGTGACCGAGAAGGGCTGCGAAATTTGGGCATCGACACAAACAC CGCAGAGTACCCAGCAAAATGTGGCCGCGGCCTTAGGTATCGCTGAGGATGCGGTGAAAGTGAATGTGACGTTACTGGGC GGCGGCTTTGGGCGCAAGTCCAAACCAGATTTCAGTGTCGAGGCAGCGCTACTCTCCAAGCAATTTAAACGGCCAGTGAA GGTGAGTTGGAGCCGTGAGGATGAAATCCAAAACGGTTATTACCACGCCATCAGTGCCCAGTGTTATCAGGCCTTGTTCG ATGCTAATAACAAACCAACGGCGCTGCTCGCGCGTACGGGCTTCCCGTCGATCAGCTCCACCTTTGCCGAGGGCGTTGAG TATCCATCCGGTGGAGAGCTGGATTTAGGCTTTGTCGATGTGCCCTTTGCCCTCGCAAATTTACGCTACGAGGCCGTTAA GGCCACAGCCCATAGCCGTATCGGTTGGATGCGCTCGGTATGTAACATTCAACATGGGTTTGGCGTGGGCAGTTTTGTCG ATGAAATGGCCCATAAAGCCAAGTTATCTTGCCCCGATATGTGGCGCAGTCTACTGGGCCAAGCAAGGCGAGAGACCTTT GAAAACCAAGGCTTTAAATATGGCAACTATGGCGAAGACTTAAACCGTCATCCAGTCGATGTCGGCCGTTACCTCAAGGT GATTGAGGCGGTTGAACAAGCCCAAGCCAAGGCGCCTAAAGTTGGTAAGAATCAAGGTTGGGGCTTTGCGGTGCACCGCA GCTTTGTGAGTGTGGTGGCGGTGGCGATGCGGGTAGAAGTCGGCGAGGACAAACAGCTTAAGGTGCTAAATGCCATTGCT GCGATTGATGCCGGCACTGTGGTTAACCCCGACAGGGTGAAAGCGCAGACTGAAGGCGCGATAGTATTTGGTTTAAGCTT GGCGCTAATGGGGGAGATCAGTTATCAAGAGGGTAAGGTGATGCAGTCTAACTTCCATGATTATCCCTTGCTACGTTTAC CCCAAGTGCCAGAGATGGAGATCATCATTATCGACTCGGATGCACCGCCTGCGGGTGTGGGTGAGCCCGGCGTGCCGCCG GTGGCACCAAGCCTGACCAATGCGATATTTGCCGCAACAGGCCTTAGGATCCGCGACCTACCAGTTAATAAACAGTTAAA GGTGTGA
Upstream 100 bases:
>100_bases GAGCAAATTGATGCTGCCATGTCGGGTAATTTGTGTCGCTGCGGTACCTATCCTCGGATAAAAGCGGCGCTGCAAAGCTA TGCCAAACAGGAGGGCTAAG
Downstream 100 bases:
>100_bases TGCTGTAAACGACACCTGAGTGAGCAAAAAAGCGCCTAATAAGCGCTTTTTTCGTTTTTTTACCACAAATAAATTGCTTG TTAGCAAATTTACGGGCATT
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 748; Mature: 747
Protein sequence:
>748_residues MSTFTAVENISRRDVLKLFGAVGGGLALGASGLSWSPMALAQDQQARLNLFIAIGEDDKVYLTCHRSEMGQGIRTGILQI LAEELEADWDKIVPIQGLADKRYASQNTDGSRSIRENYDRMREMGAMARTMLEQAAAARWKVPVSEVQAKDHQVLHAKSG RAARFGELALDAAGLPLPAADSLRLKAVKDFKQIGASRQIVDMQAMLTGKAVYGYDIQVDNMLYASIMRPPVLGSDVASL DDSAARKVAGVVDVFRMPTPKGAPAFQALGGVAVVATNTWSALQGRKALQVSWTESTNSSHDSKTYLKELVDKVQAPGKV VRQVGDEVKAWPKDDTLKAIYTVPYLIHSSIEPPVATANVTEKGCEIWASTQTPQSTQQNVAAALGIAEDAVKVNVTLLG GGFGRKSKPDFSVEAALLSKQFKRPVKVSWSREDEIQNGYYHAISAQCYQALFDANNKPTALLARTGFPSISSTFAEGVE YPSGGELDLGFVDVPFALANLRYEAVKATAHSRIGWMRSVCNIQHGFGVGSFVDEMAHKAKLSCPDMWRSLLGQARRETF ENQGFKYGNYGEDLNRHPVDVGRYLKVIEAVEQAQAKAPKVGKNQGWGFAVHRSFVSVVAVAMRVEVGEDKQLKVLNAIA AIDAGTVVNPDRVKAQTEGAIVFGLSLALMGEISYQEGKVMQSNFHDYPLLRLPQVPEMEIIIIDSDAPPAGVGEPGVPP VAPSLTNAIFAATGLRIRDLPVNKQLKV
Sequences:
>Translated_748_residues MSTFTAVENISRRDVLKLFGAVGGGLALGASGLSWSPMALAQDQQARLNLFIAIGEDDKVYLTCHRSEMGQGIRTGILQI LAEELEADWDKIVPIQGLADKRYASQNTDGSRSIRENYDRMREMGAMARTMLEQAAAARWKVPVSEVQAKDHQVLHAKSG RAARFGELALDAAGLPLPAADSLRLKAVKDFKQIGASRQIVDMQAMLTGKAVYGYDIQVDNMLYASIMRPPVLGSDVASL DDSAARKVAGVVDVFRMPTPKGAPAFQALGGVAVVATNTWSALQGRKALQVSWTESTNSSHDSKTYLKELVDKVQAPGKV VRQVGDEVKAWPKDDTLKAIYTVPYLIHSSIEPPVATANVTEKGCEIWASTQTPQSTQQNVAAALGIAEDAVKVNVTLLG GGFGRKSKPDFSVEAALLSKQFKRPVKVSWSREDEIQNGYYHAISAQCYQALFDANNKPTALLARTGFPSISSTFAEGVE YPSGGELDLGFVDVPFALANLRYEAVKATAHSRIGWMRSVCNIQHGFGVGSFVDEMAHKAKLSCPDMWRSLLGQARRETF ENQGFKYGNYGEDLNRHPVDVGRYLKVIEAVEQAQAKAPKVGKNQGWGFAVHRSFVSVVAVAMRVEVGEDKQLKVLNAIA AIDAGTVVNPDRVKAQTEGAIVFGLSLALMGEISYQEGKVMQSNFHDYPLLRLPQVPEMEIIIIDSDAPPAGVGEPGVPP VAPSLTNAIFAATGLRIRDLPVNKQLKV >Mature_747_residues STFTAVENISRRDVLKLFGAVGGGLALGASGLSWSPMALAQDQQARLNLFIAIGEDDKVYLTCHRSEMGQGIRTGILQIL AEELEADWDKIVPIQGLADKRYASQNTDGSRSIRENYDRMREMGAMARTMLEQAAAARWKVPVSEVQAKDHQVLHAKSGR AARFGELALDAAGLPLPAADSLRLKAVKDFKQIGASRQIVDMQAMLTGKAVYGYDIQVDNMLYASIMRPPVLGSDVASLD DSAARKVAGVVDVFRMPTPKGAPAFQALGGVAVVATNTWSALQGRKALQVSWTESTNSSHDSKTYLKELVDKVQAPGKVV RQVGDEVKAWPKDDTLKAIYTVPYLIHSSIEPPVATANVTEKGCEIWASTQTPQSTQQNVAAALGIAEDAVKVNVTLLGG GFGRKSKPDFSVEAALLSKQFKRPVKVSWSREDEIQNGYYHAISAQCYQALFDANNKPTALLARTGFPSISSTFAEGVEY PSGGELDLGFVDVPFALANLRYEAVKATAHSRIGWMRSVCNIQHGFGVGSFVDEMAHKAKLSCPDMWRSLLGQARRETFE NQGFKYGNYGEDLNRHPVDVGRYLKVIEAVEQAQAKAPKVGKNQGWGFAVHRSFVSVVAVAMRVEVGEDKQLKVLNAIAA IDAGTVVNPDRVKAQTEGAIVFGLSLALMGEISYQEGKVMQSNFHDYPLLRLPQVPEMEIIIIDSDAPPAGVGEPGVPPV APSLTNAIFAATGLRIRDLPVNKQLKV
Specific function: Specific towards N-containing N-heterocyclic substrates, including isoquinoline, isoquinolin-5-ol, phthalazine and quinazoline [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786478, Length=130, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.3.99.16 [H]
Molecular weight: Translated: 80995; Mature: 80864
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTFTAVENISRRDVLKLFGAVGGGLALGASGLSWSPMALAQDQQARLNLFIAIGEDDKV CCCHHHHHHCCHHHHHHHHHHCCCCHHCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCEE YLTCHRSEMGQGIRTGILQILAEELEADWDKIVPIQGLADKRYASQNTDGSRSIRENYDR EEEEECHHHCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHH MREMGAMARTMLEQAAAARWKVPVSEVQAKDHQVLHAKSGRAARFGELALDAAGLPLPAA HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCHHHHCCCCCCCCCCC DSLRLKAVKDFKQIGASRQIVDMQAMLTGKAVYGYDIQVDNMLYASIMRPPVLGSDVASL CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEEEECCHHHHHHHCCCCCCCHHHHC DDSAARKVAGVVDVFRMPTPKGAPAFQALGGVAVVATNTWSALQGRKALQVSWTESTNSS CHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEEECCHHHHCCCCEEEEEECCCCCCC HDSKTYLKELVDKVQAPGKVVRQVGDEVKAWPKDDTLKAIYTVPYLIHSSIEPPVATANV CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCC TEKGCEIWASTQTPQSTQQNVAAALGIAEDAVKVNVTLLGGGFGRKSKPDFSVEAALLSK CHHCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH QFKRPVKVSWSREDEIQNGYYHAISAQCYQALFDANNKPTALLARTGFPSISSTFAEGVE HHCCCCEEECCCCHHHCCCEEEHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC YPSGGELDLGFVDVPFALANLRYEAVKATAHSRIGWMRSVCNIQHGFGVGSFVDEMAHKA CCCCCCEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH KLSCPDMWRSLLGQARRETFENQGFKYGNYGEDLNRHPVDVGRYLKVIEAVEQAQAKAPK CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC VGKNQGWGFAVHRSFVSVVAVAMRVEVGEDKQLKVLNAIAAIDAGTVVNPDRVKAQTEGA CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCE IVFGLSLALMGEISYQEGKVMQSNFHDYPLLRLPQVPEMEIIIIDSDAPPAGVGEPGVPP EEEEEHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCC VAPSLTNAIFAATGLRIRDLPVNKQLKV CCHHHHHHHHHHCCCEEEECCCCCCCCC >Mature Secondary Structure STFTAVENISRRDVLKLFGAVGGGLALGASGLSWSPMALAQDQQARLNLFIAIGEDDKV CCHHHHHHCCHHHHHHHHHHCCCCHHCCCCCCCCCCHHHCCCCCCEEEEEEEECCCCEE YLTCHRSEMGQGIRTGILQILAEELEADWDKIVPIQGLADKRYASQNTDGSRSIRENYDR EEEEECHHHCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHH MREMGAMARTMLEQAAAARWKVPVSEVQAKDHQVLHAKSGRAARFGELALDAAGLPLPAA HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEECCCCCCCCHHHHCCCCCCCCCCC DSLRLKAVKDFKQIGASRQIVDMQAMLTGKAVYGYDIQVDNMLYASIMRPPVLGSDVASL CCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEEEEECCHHHHHHHCCCCCCCHHHHC DDSAARKVAGVVDVFRMPTPKGAPAFQALGGVAVVATNTWSALQGRKALQVSWTESTNSS CHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCEEEEEECCHHHHCCCCEEEEEECCCCCCC HDSKTYLKELVDKVQAPGKVVRQVGDEVKAWPKDDTLKAIYTVPYLIHSSIEPPVATANV CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCC TEKGCEIWASTQTPQSTQQNVAAALGIAEDAVKVNVTLLGGGFGRKSKPDFSVEAALLSK CHHCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHH QFKRPVKVSWSREDEIQNGYYHAISAQCYQALFDANNKPTALLARTGFPSISSTFAEGVE HHCCCCEEECCCCHHHCCCEEEHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCC YPSGGELDLGFVDVPFALANLRYEAVKATAHSRIGWMRSVCNIQHGFGVGSFVDEMAHKA CCCCCCEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH KLSCPDMWRSLLGQARRETFENQGFKYGNYGEDLNRHPVDVGRYLKVIEAVEQAQAKAPK CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC VGKNQGWGFAVHRSFVSVVAVAMRVEVGEDKQLKVLNAIAAIDAGTVVNPDRVKAQTEGA CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCE IVFGLSLALMGEISYQEGKVMQSNFHDYPLLRLPQVPEMEIIIIDSDAPPAGVGEPGVPP EEEEEHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCC VAPSLTNAIFAATGLRIRDLPVNKQLKV CCHHHHHHHHHHCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7782304; 8157655 [H]