Click here to switch to the map view.

The map label for this gene is fliC [H]

Identifier: 113969616

GI number: 113969616

Start: 1480198

End: 1481652

Strand: Direct

Name: fliC [H]

Synonym: Shewmr4_1273

Alternate gene names: 113969616

Gene position: 1480198-1481652 (Clockwise)

Preceding gene: 113969614

Following gene: 113969617

Centisome position: 31.45

GC content: 43.99

Gene sequence:

>1455_bases
ATGGCTATTTCAGTAAACACCAACGTCACCTCAATGCGTGCGCAAAACCAATTAAATGGTGCCAATTCAAAACTATCCAC
CTCGATGGAGCGTTTATCCTCTGGTCTGCGAATCAACAGTGCTAAAGATGATGCTGCAGGTCTGCAAATCTCTAACCGTA
TGACCAGCCAAGTGAATGGTATCGGGGTGGCTATGCGCAATGCCAACGATGGTATCTCCATTGCCCAAACCGCCGAAGGC
GCGATGCAAGAATCAACCAATATTCTGCAGCGGATGCGTGATTTATCTTTACAATCTGCAAACGGTTCTAACTCTTCAGA
AGATAGAGCTGCAATGCAGAAAGAAGTTAATGCGTTGCAGTCAGAGCTCACTCGAATTTCAGAGACTACATCATTTGGTG
GCCAAAAGTTACTGGATGGCTCTTATGGAACACAATCATTTCAGGTCGGCGCACAAGCAAATGAGACTATTTCAGTTTCT
TTAAAATCAGTTGCTGCAGCGGATATTGGTGCTTATAAGAGTGACGCGGCAGGTTCTAAATTTGGCGGGGATTTAGTTAC
AGCGGTTGCTGGCTCCAACGGTTCAGCTGGTGGCAATTTATCAATAACACAAGGTACTAAAACCACTACATTTGCAACTG
CTGCTAATGATACCGCTGCCGAGGTTGCTGGTAAAATCAATAAAGCAGGCACAGGTGTGACTGCCACGGCTCAAACAACT
ATTGAAGCTAACTTGACTGAGGCTTTCGATAAAGGTTTGACCATGAAAGTTGATGATGGAAATAGTACCTCCTCATTAGA
TTTGACCGGTATTGGTAATAATGATGACTTAGCTAAAGCCATAAATAACGTATCAGGTGAAACAGGTGTTAGTGCAAAAC
TGGAAAACGGTGTACTAACCATTACTAGCTCCAAAGGTGCTGATATTAGCTTTAGTGATACAGCTACCGCAGGTACAGGT
ACGTTAACACTGAAAAATATTTCAGCGGATGGCACCTCAAGTGCAGTATCAACAATAGACGGTACAGATACGACGGTTGA
CAATGCAACAGCAGTGGGTTCAGTGTCATTAACTGCTTCTTCAGCCTATTCAATTAGCGGAGGTATTGCAGCCGAATTGA
CAACTGAGGTGGCTGGAGTATTTGCTGGTGTGAATAGCGTGGATTTATCAACTGCTTCAGGTTCTCAGTCCGCGCTGGCT
ATTATTGATGGTGCCATTGCAGGAATTGATAGCCAACGTGCCGATTTAGGTGCGGTGCAAAACCGGATGAACTTTACTAT
CAATAACCTAAGCAATATTCAATCTAACGTAACCGATGCTCGTAGCCGTATTCAAGATGTGGACTTTGCCTCAGAAACTG
CGCAGTTAACTAAGCAGCAAATTTTGTCACAAACCTCATCTGCTATGTTGGCTCAGGCTAACCAATTACCACAAACTGCG
CTTTCTTTACTCTAA

Upstream 100 bases:

>100_bases
TAAAGGTCTTTTATCCCTTGCCGTTAAAGTGAGTGTAGAAAATAAACCTTGCCTGACAGTACTGACAGGCACTATTCAAG
TTAGGTAGAGGGCAATAATC

Downstream 100 bases:

>100_bases
TAGCATTGCGGCGTTAGTATAGTGGAGTAGATTAGGGAGAGTCGGTCACGATTCTCCCTTTTATCTTTAAAAGTGCTAGG
TATTAGATATCAATTAATCT

Product: flagellin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MAISVNTNVTSMRAQNQLNGANSKLSTSMERLSSGLRINSAKDDAAGLQISNRMTSQVNGIGVAMRNANDGISIAQTAEG
AMQESTNILQRMRDLSLQSANGSNSSEDRAAMQKEVNALQSELTRISETTSFGGQKLLDGSYGTQSFQVGAQANETISVS
LKSVAAADIGAYKSDAAGSKFGGDLVTAVAGSNGSAGGNLSITQGTKTTTFATAANDTAAEVAGKINKAGTGVTATAQTT
IEANLTEAFDKGLTMKVDDGNSTSSLDLTGIGNNDDLAKAINNVSGETGVSAKLENGVLTITSSKGADISFSDTATAGTG
TLTLKNISADGTSSAVSTIDGTDTTVDNATAVGSVSLTASSAYSISGGIAAELTTEVAGVFAGVNSVDLSTASGSQSALA
IIDGAIAGIDSQRADLGAVQNRMNFTINNLSNIQSNVTDARSRIQDVDFASETAQLTKQQILSQTSSAMLAQANQLPQTA
LSLL

Sequences:

>Translated_484_residues
MAISVNTNVTSMRAQNQLNGANSKLSTSMERLSSGLRINSAKDDAAGLQISNRMTSQVNGIGVAMRNANDGISIAQTAEG
AMQESTNILQRMRDLSLQSANGSNSSEDRAAMQKEVNALQSELTRISETTSFGGQKLLDGSYGTQSFQVGAQANETISVS
LKSVAAADIGAYKSDAAGSKFGGDLVTAVAGSNGSAGGNLSITQGTKTTTFATAANDTAAEVAGKINKAGTGVTATAQTT
IEANLTEAFDKGLTMKVDDGNSTSSLDLTGIGNNDDLAKAINNVSGETGVSAKLENGVLTITSSKGADISFSDTATAGTG
TLTLKNISADGTSSAVSTIDGTDTTVDNATAVGSVSLTASSAYSISGGIAAELTTEVAGVFAGVNSVDLSTASGSQSALA
IIDGAIAGIDSQRADLGAVQNRMNFTINNLSNIQSNVTDARSRIQDVDFASETAQLTKQQILSQTSSAMLAQANQLPQTA
LSLL
>Mature_483_residues
AISVNTNVTSMRAQNQLNGANSKLSTSMERLSSGLRINSAKDDAAGLQISNRMTSQVNGIGVAMRNANDGISIAQTAEGA
MQESTNILQRMRDLSLQSANGSNSSEDRAAMQKEVNALQSELTRISETTSFGGQKLLDGSYGTQSFQVGAQANETISVSL
KSVAAADIGAYKSDAAGSKFGGDLVTAVAGSNGSAGGNLSITQGTKTTTFATAANDTAAEVAGKINKAGTGVTATAQTTI
EANLTEAFDKGLTMKVDDGNSTSSLDLTGIGNNDDLAKAINNVSGETGVSAKLENGVLTITSSKGADISFSDTATAGTGT
LTLKNISADGTSSAVSTIDGTDTTVDNATAVGSVSLTASSAYSISGGIAAELTTEVAGVFAGVNSVDLSTASGSQSALAI
IDGAIAGIDSQRADLGAVQNRMNFTINNLSNIQSNVTDARSRIQDVDFASETAQLTKQQILSQTSSAMLAQANQLPQTAL
SLL

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=170, Percent_Identity=50, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029
- InterPro:   IPR010810 [H]

Pfam domain/function: PF00700 Flagellin_C; PF07196 Flagellin_IN; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 48956; Mature: 48825

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISVNTNVTSMRAQNQLNGANSKLSTSMERLSSGLRINSAKDDAAGLQISNRMTSQVNG
CEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCCCEEEHHHHHHHHCC
IGVAMRNANDGISIAQTAEGAMQESTNILQRMRDLSLQSANGSNSSEDRAAMQKEVNALQ
EEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
SELTRISETTSFGGQKLLDGSYGTQSFQVGAQANETISVSLKSVAAADIGAYKSDAAGSK
HHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCC
FGGDLVTAVAGSNGSAGGNLSITQGTKTTTFATAANDTAAEVAGKINKAGTGVTATAQTT
CCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEE
IEANLTEAFDKGLTMKVDDGNSTSSLDLTGIGNNDDLAKAINNVSGETGVSAKLENGVLT
EECHHHHHHHCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEECCCEEE
ITSSKGADISFSDTATAGTGTLTLKNISADGTSSAVSTIDGTDTTVDNATAVGSVSLTAS
EECCCCCCEECCCCCCCCCCEEEEEECCCCCCCHHHEECCCCCCCCCCCEEECEEEEECC
SAYSISGGIAAELTTEVAGVFAGVNSVDLSTASGSQSALAIIDGAIAGIDSQRADLGAVQ
CCEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEHHHHHCCCCCHHHHHHHH
NRMNFTINNLSNIQSNVTDARSRIQDVDFASETAQLTKQQILSQTSSAMLAQANQLPQTA
HHCCEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LSLL
HHCC
>Mature Secondary Structure 
AISVNTNVTSMRAQNQLNGANSKLSTSMERLSSGLRINSAKDDAAGLQISNRMTSQVNG
EEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEECCCCCCCCCEEEHHHHHHHHCC
IGVAMRNANDGISIAQTAEGAMQESTNILQRMRDLSLQSANGSNSSEDRAAMQKEVNALQ
EEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
SELTRISETTSFGGQKLLDGSYGTQSFQVGAQANETISVSLKSVAAADIGAYKSDAAGSK
HHHHHHHHHHCCCCCEEECCCCCCCEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCC
FGGDLVTAVAGSNGSAGGNLSITQGTKTTTFATAANDTAAEVAGKINKAGTGVTATAQTT
CCCCEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEE
IEANLTEAFDKGLTMKVDDGNSTSSLDLTGIGNNDDLAKAINNVSGETGVSAKLENGVLT
EECHHHHHHHCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCEEECCCEEE
ITSSKGADISFSDTATAGTGTLTLKNISADGTSSAVSTIDGTDTTVDNATAVGSVSLTAS
EECCCCCCEECCCCCCCCCCEEEEEECCCCCCCHHHEECCCCCCCCCCCEEECEEEEECC
SAYSISGGIAAELTTEVAGVFAGVNSVDLSTASGSQSALAIIDGAIAGIDSQRADLGAVQ
CCEEECCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEHHHHHCCCCCHHHHHHHH
NRMNFTINNLSNIQSNVTDARSRIQDVDFASETAQLTKQQILSQTSSAMLAQANQLPQTA
HHCCEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LSLL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043; 1697577 [H]