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The map label for this gene is lppB [H]

Identifier: 113969466

GI number: 113969466

Start: 1316137

End: 1317033

Strand: Direct

Name: lppB [H]

Synonym: Shewmr4_1122

Alternate gene names: 113969466

Gene position: 1316137-1317033 (Clockwise)

Preceding gene: 113969465

Following gene: 113969467

Centisome position: 27.97

GC content: 42.03

Gene sequence:

>897_bases
TTGTTGAATGCGGGTTTACTCTTAAACCTCAGTTTAGTGTTGTTGCTTGCAGGCTGTAGCTTTCAGGCGAGTCGCCCCGC
ACCTGTCGAAAGTCTTTCCCACAATTATTCCAAACATAATAAAGGCCACATTAAATCTAATTCATATAAAGTTAAGAAAG
GGGACACCCTGTACTCGATTTCTTGGGCCGCGGGTAAAGATTTCGCCGAAATTGCTAAAATTAATCAATTAGATAAATCG
TACACCATCTACCCTGGACAGATTTTATATTTAACGAATGACGATAGAAAAAATGCCAAAGGTTCTACAACTTTAGGTGG
AAGTAATTCGGTATCTAAAGGGCGGAATCAAGATAATTTTTCGGAAAAACAATCAGCTAACAGCAATTCCTCCGCGAAAA
ACTTGTCAAGTGAACAGCAGAAAAAAACACTTGATCAGAAAGCGAAGCCTGCGTATTCTGCAACAAGTTCCCAACAAAAT
ATTAACCCTTCGATCGTCGCCCCTACCTCAACACTGCCAGACAGTGTCAGTCAGTGGCAATGGCCAGTAAAAGGTAAATT
GATTGGGACATACTCTGCCAATGAGCAGGGAAATAAAGGAATTAAGATCGCAGGAAAACGCGGAGATATCATCAAAGCCG
CTGCAGATGGGCGGGTGGTATACGCAGGTAGTGCTCTTAGGGGTTATGGTAATTTAGTGATTATTAAACATAGTGACGAT
TACCTTAGTGCCTATGCTCATGCAGATCAGATCTTAGTCGAAGAAAAGCAACATGTCCTCGCTGGACAGACAGTTGCAAA
AATGGGCAGTACAGGTACGAACCAGGTAATGCTTCGCTTTGAGATCCGTTACCACGGTCAGTCTGTTAACCCACTTAATT
ATTTACCTAAGCAATGA

Upstream 100 bases:

>100_bases
TAATTTATTTGCTTAAGTTTTTCGCTTAGGTCACTTAGTTAAATACTTGACCTTTTATGATTAGGTAAAACAGTAAGATA
GCCCTAAAGAGGAGTTTTTA

Downstream 100 bases:

>100_bases
TTGTTTAGGGCCTTGTTGGCATGGAGGATAAAAAATTGCAGTAATTCAAGCAGTTTACATTAGGTTTGGGAGATTCGATC
ATGAGCCGCATAAATAGCAC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MLNAGLLLNLSLVLLLAGCSFQASRPAPVESLSHNYSKHNKGHIKSNSYKVKKGDTLYSISWAAGKDFAEIAKINQLDKS
YTIYPGQILYLTNDDRKNAKGSTTLGGSNSVSKGRNQDNFSEKQSANSNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQN
INPSIVAPTSTLPDSVSQWQWPVKGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ

Sequences:

>Translated_298_residues
MLNAGLLLNLSLVLLLAGCSFQASRPAPVESLSHNYSKHNKGHIKSNSYKVKKGDTLYSISWAAGKDFAEIAKINQLDKS
YTIYPGQILYLTNDDRKNAKGSTTLGGSNSVSKGRNQDNFSEKQSANSNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQN
INPSIVAPTSTLPDSVSQWQWPVKGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ
>Mature_298_residues
MLNAGLLLNLSLVLLLAGCSFQASRPAPVESLSHNYSKHNKGHIKSNSYKVKKGDTLYSISWAAGKDFAEIAKINQLDKS
YTIYPGQILYLTNDDRKNAKGSTTLGGSNSVSKGRNQDNFSEKQSANSNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQN
INPSIVAPTSTLPDSVSQWQWPVKGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=296, Percent_Identity=41.2162162162162, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI87082174, Length=296, Percent_Identity=38.5135135135135, Blast_Score=179, Evalue=1e-46,
Organism=Escherichia coli, GI87082297, Length=150, Percent_Identity=36.6666666666667, Blast_Score=81, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32307; Mature: 32307

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAGLLLNLSLVLLLAGCSFQASRPAPVESLSHNYSKHNKGHIKSNSYKVKKGDTLYSI
CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEE
SWAAGKDFAEIAKINQLDKSYTIYPGQILYLTNDDRKNAKGSTTLGGSNSVSKGRNQDNF
EECCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
SEKQSANSNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQNINPSIVAPTSTLPDSVSQWQ
HHHHCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCC
WPVKGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
CCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEECCH
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLNAGLLLNLSLVLLLAGCSFQASRPAPVESLSHNYSKHNKGHIKSNSYKVKKGDTLYSI
CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCEEEEE
SWAAGKDFAEIAKINQLDKSYTIYPGQILYLTNDDRKNAKGSTTLGGSNSVSKGRNQDNF
EECCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
SEKQSANSNSSAKNLSSEQQKKTLDQKAKPAYSATSSQQNINPSIVAPTSTLPDSVSQWQ
HHHHCCCCCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCC
WPVKGKLIGTYSANEQGNKGIKIAGKRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
CCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEECCH
YLSAYAHADQILVEEKQHVLAGQTVAKMGSTGTNQVMLRFEIRYHGQSVNPLNYLPKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]