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The map label for this gene is yhjC [H]

Identifier: 113969450

GI number: 113969450

Start: 1297610

End: 1298509

Strand: Direct

Name: yhjC [H]

Synonym: Shewmr4_1106

Alternate gene names: 113969450

Gene position: 1297610-1298509 (Clockwise)

Preceding gene: 113969446

Following gene: 113969454

Centisome position: 27.57

GC content: 47.56

Gene sequence:

>900_bases
ATGGCTGATGATGTAGGCGGCGAGCTGCAATTAATTTATCTGTTTGTGCATTTAGTGAATGCGGGGAGTTTTTCTCTGGC
GGCTAAAGAACTCGATATGCCCATCGCCACCGTGAGCCGTAAGCTGGCCAAACTTGAGGAAAAGCTTGATAAGCAGTTGT
TTATGCGTAGCACCCGTAAACTGCGGTTAACCGAAGAAGGCTTAGCATTATTCCAACGTTATCAGAGCGTCATTGCCCAA
TTTGATGAACTCAGTGGCATTGGTAGCGATAAGCCCGAAGGGACATTGCGGATTGCGGCGCCGATTTCGATTATTTCTAT
CATCTTTATCCGCGCATTGAACGAATTTGGGCGTTTATATCCCGATATTCGCTTACATATCTCACAAAGTAATGAGTTAG
TGGATTTAATCGATAAAGGGATCGATGTGGCGATTGTGGGCGGCGCGCAGCCTGATTCCTCTTGGGTGTCGAGCACCTTA
GGTGAACTCGATTATCGCCTGTTTGCCACGCCGGAATATTTAGCCACTGCGCCAAAGTTAACCCATCCCGATGACCTCGA
AGCCCACCAGTTAATTAAGGTTTGGCCACTGTTTAATTGGCATTTAAAGCACCCCAATGGCGAGTCGTTCTATTTTAATG
GTCCGACAAAACTCACGCTTACGGATCTTCACGGTGCGATTCAGGCGACACTCGACCACGGCGGCATTCTCTATGGCCCA
GAATTATTTGTAAAACAACAGATTAAAGATGGTCAGTTAAAAGTGTTGCTGCCGGAATGGATAGGTGAGCAGCGCAGAAT
ATCGATTCTGTATCACCAACGGAGTCAGCAGCCGCAGAAGGTCAGGGTGTTTATCGAGTTTATGCAGTCTAAGGCGCCTG
AGCTGTTCTCGATGGCGTAA

Upstream 100 bases:

>100_bases
TTGCGCTATGGTCGTAGAAGTGAATAATTCTACGTTTAAAACACAATGAGGTAGTGCGCGTTATGGATGCAAGCACTCAC
ATACACAATTGGGATTGAGA

Downstream 100 bases:

>100_bases
GCCTGTTAGCGTTTGCGAGGTTTTAGCGGATTTTTACTCATGGAGTTTTGGGTCTGTTTCGCCTCTTGCAGGCTGGCGCG
GGTGGCTGGCAAGATACCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MADDVGGELQLIYLFVHLVNAGSFSLAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQ
FDELSGIGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYRLFATPEYLATAPKLTHPDDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGP
ELFVKQQIKDGQLKVLLPEWIGEQRRISILYHQRSQQPQKVRVFIEFMQSKAPELFSMA

Sequences:

>Translated_299_residues
MADDVGGELQLIYLFVHLVNAGSFSLAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQ
FDELSGIGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTL
GELDYRLFATPEYLATAPKLTHPDDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGP
ELFVKQQIKDGQLKVLLPEWIGEQRRISILYHQRSQQPQKVRVFIEFMQSKAPELFSMA
>Mature_298_residues
ADDVGGELQLIYLFVHLVNAGSFSLAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRKLRLTEEGLALFQRYQSVIAQF
DELSGIGSDKPEGTLRIAAPISIISIIFIRALNEFGRLYPDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLG
ELDYRLFATPEYLATAPKLTHPDDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGPE
LFVKQQIKDGQLKVLLPEWIGEQRRISILYHQRSQQPQKVRVFIEFMQSKAPELFSMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=30.1038062283737, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=28.6219081272085, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=27.3356401384083, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=29.2682926829268, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=28.8135593220339, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788706, Length=263, Percent_Identity=29.277566539924, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=26.3888888888889, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=23.1292517006803, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786448, Length=253, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789173, Length=281, Percent_Identity=24.5551601423488, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=30.9677419354839, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33721; Mature: 33590

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDVGGELQLIYLFVHLVNAGSFSLAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
LRLTEEGLALFQRYQSVIAQFDELSGIGSDKPEGTLRIAAPISIISIIFIRALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYRLFATPEYLATAPKL
CCEEEEECCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCHHHHCCCCC
THPDDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGP
CCCCCCCHHHHEEEECCEEEEEECCCCCEEEECCCCEEEEEECCHHHHHHHCCCCEEECH
ELFVKQQIKDGQLKVLLPEWIGEQRRISILYHQRSQQPQKVRVFIEFMQSKAPELFSMA
HHHHHHHCCCCCEEEEEHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
ADDVGGELQLIYLFVHLVNAGSFSLAAKELDMPIATVSRKLAKLEEKLDKQLFMRSTRK
CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
LRLTEEGLALFQRYQSVIAQFDELSGIGSDKPEGTLRIAAPISIISIIFIRALNEFGRLY
EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHC
PDIRLHISQSNELVDLIDKGIDVAIVGGAQPDSSWVSSTLGELDYRLFATPEYLATAPKL
CCEEEEECCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEECCCHHHHCCCCC
THPDDLEAHQLIKVWPLFNWHLKHPNGESFYFNGPTKLTLTDLHGAIQATLDHGGILYGP
CCCCCCCHHHHEEEECCEEEEEECCCCCEEEECCCCEEEEEECCHHHHHHHCCCCEEECH
ELFVKQQIKDGQLKVLLPEWIGEQRRISILYHQRSQQPQKVRVFIEFMQSKAPELFSMA
HHHHHHHCCCCCEEEEEHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]