| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969191
Identifier: 113969191
GI number: 113969191
Start: 1002328
End: 1003365
Strand: Direct
Name: 113969191
Synonym: Shewmr4_0847
Alternate gene names: NA
Gene position: 1002328-1003365 (Clockwise)
Preceding gene: 113969190
Following gene: 113969192
Centisome position: 21.3
GC content: 51.54
Gene sequence:
>1038_bases ATGAATAAACGTATTGTGATTTGTGCCGACGGAACTTGGAATCGGCCAGAGAAAGACCTTAAGGTGGATTTTCCCACTAA TGTGCTGCGTCTGGCGCGGGCCATCAGCCCTATGGCGGCCGATGGAAAACCCCAGCAGGTGTTTTACGACTGGGGCGTTG GCTCCTATTACGATCAAGCCATTGGCGGCGCGACGGGGCGTGGGCTGCACAAAAATATCATGGATGGTTACCGCTATTTA GTGCAGAACTATTCCCCCGGTGATGAGATCTATCTGTTTGGCTTTAGCCGAGGCGCTTACACAGTGCGCTGTTTATGTGG CCTTATCAATAATTGCGGCATCCTCAAGCGTCCCGATGCGAGGCTTATTCAACAAGCCTTTGACCACTATAAAAAAAGCA GCGCGCCCTTTGCCCCAAGCGGCGATAAATCCGTTGAATTTAGACAACAGCACAGCCACGAATCGCGGGAGATTAAGTTT GTTGGCGTGTGGGATACGGTGGGCGCCATGGGGATCCCGATTTCGTTTCTCGGCTTATTCGAAGATAAAGACGAGTTTTA CGACACTAAGATTGGCCGTAATGTGCGGGTTGCCCGCCATGCCTTAGCGATAGACGAACATCGCAGCGACTTCGAACCTA CGATTTGGCAAGTGCGCGACAATATGGATATGCAACAGGTCTGGTTTGCCGGTGCCCATAGCAATATTGGCGGCAGCTAT CTGCCAGATAAGGATGGCTCGCTATTGTCGGATAATGCGCTCGCGTGGATGATGGCCGAGGCTGAGCGATTTAATTTGAG CTTAGAGCCGCACCTAGCGGCGAGTTTGCATCCCAATCCTTTGGCGACTTTACACGACTCGCGCCGCAGTTTTTACCGAA TTAAGCAATCTTATTTGCGCACAATTGACCCTAACGTCGCGCCCGTGTTGCTGCATCGCTCGGTGAAAACCCGCTGGGAT CAAGACCCTAAATATCGGCCTAAAAACCTGCAGACCTACCTTGAGCAGTACGGCTGGCCAGAAGAATTCATCGATTAA
Upstream 100 bases:
>100_bases GGGCTGTTGTTCCTCGGTAAAATCCGTTAGCGTCACTATGGTTAGCGTTTTTATCTATAGCCGTTAGCGTGAGTAGCATG GGTAACTCAAGGATGATGCG
Downstream 100 bases:
>100_bases ATATAAGGAATATCATGTTCATGCGACGCTTTATTGCCCTCGGCCTGAGCTTGGCGCTGTTACCCATAGCGGCGATGGCC GAGCCTGCAAAACGTATTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MNKRIVICADGTWNRPEKDLKVDFPTNVLRLARAISPMAADGKPQQVFYDWGVGSYYDQAIGGATGRGLHKNIMDGYRYL VQNYSPGDEIYLFGFSRGAYTVRCLCGLINNCGILKRPDARLIQQAFDHYKKSSAPFAPSGDKSVEFRQQHSHESREIKF VGVWDTVGAMGIPISFLGLFEDKDEFYDTKIGRNVRVARHALAIDEHRSDFEPTIWQVRDNMDMQQVWFAGAHSNIGGSY LPDKDGSLLSDNALAWMMAEAERFNLSLEPHLAASLHPNPLATLHDSRRSFYRIKQSYLRTIDPNVAPVLLHRSVKTRWD QDPKYRPKNLQTYLEQYGWPEEFID
Sequences:
>Translated_345_residues MNKRIVICADGTWNRPEKDLKVDFPTNVLRLARAISPMAADGKPQQVFYDWGVGSYYDQAIGGATGRGLHKNIMDGYRYL VQNYSPGDEIYLFGFSRGAYTVRCLCGLINNCGILKRPDARLIQQAFDHYKKSSAPFAPSGDKSVEFRQQHSHESREIKF VGVWDTVGAMGIPISFLGLFEDKDEFYDTKIGRNVRVARHALAIDEHRSDFEPTIWQVRDNMDMQQVWFAGAHSNIGGSY LPDKDGSLLSDNALAWMMAEAERFNLSLEPHLAASLHPNPLATLHDSRRSFYRIKQSYLRTIDPNVAPVLLHRSVKTRWD QDPKYRPKNLQTYLEQYGWPEEFID >Mature_345_residues MNKRIVICADGTWNRPEKDLKVDFPTNVLRLARAISPMAADGKPQQVFYDWGVGSYYDQAIGGATGRGLHKNIMDGYRYL VQNYSPGDEIYLFGFSRGAYTVRCLCGLINNCGILKRPDARLIQQAFDHYKKSSAPFAPSGDKSVEFRQQHSHESREIKF VGVWDTVGAMGIPISFLGLFEDKDEFYDTKIGRNVRVARHALAIDEHRSDFEPTIWQVRDNMDMQQVWFAGAHSNIGGSY LPDKDGSLLSDNALAWMMAEAERFNLSLEPHLAASLHPNPLATLHDSRRSFYRIKQSYLRTIDPNVAPVLLHRSVKTRWD QDPKYRPKNLQTYLEQYGWPEEFID
Specific function: Unknown
COG id: COG3673
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6320812, Length=232, Percent_Identity=27.5862068965517, Blast_Score=84, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39456; Mature: 39456
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKRIVICADGTWNRPEKDLKVDFPTNVLRLARAISPMAADGKPQQVFYDWGVGSYYDQA CCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHH IGGATGRGLHKNIMDGYRYLVQNYSPGDEIYLFGFSRGAYTVRCLCGLINNCGILKRPDA HCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCHH RLIQQAFDHYKKSSAPFAPSGDKSVEFRQQHSHESREIKFVGVWDTVGAMGIPISFLGLF HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEHHCCCCCCCCHHHHHHH EDKDEFYDTKIGRNVRVARHALAIDEHRSDFEPTIWQVRDNMDMQQVWFAGAHSNIGGSY CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHEECCCCCCCCCC LPDKDGSLLSDNALAWMMAEAERFNLSLEPHLAASLHPNPLATLHDSRRSFYRIKQSYLR CCCCCCCEECCCCCEEEEEHHHHCCCEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH TIDPNVAPVLLHRSVKTRWDQDPKYRPKNLQTYLEQYGWPEEFID HCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHCC >Mature Secondary Structure MNKRIVICADGTWNRPEKDLKVDFPTNVLRLARAISPMAADGKPQQVFYDWGVGSYYDQA CCCEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHH IGGATGRGLHKNIMDGYRYLVQNYSPGDEIYLFGFSRGAYTVRCLCGLINNCGILKRPDA HCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCHH RLIQQAFDHYKKSSAPFAPSGDKSVEFRQQHSHESREIKFVGVWDTVGAMGIPISFLGLF HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEHHCCCCCCCCHHHHHHH EDKDEFYDTKIGRNVRVARHALAIDEHRSDFEPTIWQVRDNMDMQQVWFAGAHSNIGGSY CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHEECCCCCCCCCC LPDKDGSLLSDNALAWMMAEAERFNLSLEPHLAASLHPNPLATLHDSRRSFYRIKQSYLR CCCCCCCEECCCCCEEEEEHHHHCCCEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH TIDPNVAPVLLHRSVKTRWDQDPKYRPKNLQTYLEQYGWPEEFID HCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA