| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969181
Identifier: 113969181
GI number: 113969181
Start: 987431
End: 989365
Strand: Direct
Name: 113969181
Synonym: Shewmr4_0837
Alternate gene names: NA
Gene position: 987431-989365 (Clockwise)
Preceding gene: 113969180
Following gene: 113969183
Centisome position: 20.98
GC content: 30.85
Gene sequence:
>1935_bases TTGATATTTTCAATTTTTTTGCGGAATTTTAAAATATATCGAGGTTGGAATTACGTTCCTATTTCAACTGGTGATTATTT TACTGCATTCATTGGTGATAATGGAGTTGGTAAAAGCTCTATATTAGAGGCTTTAGATACTTTTTTTAATAGACCAATGT CAGAATGGAATTATAACCACTCTATTATTAAAAGTGGGTTTGATAGAGAGCCAAATATTTGTCCTATCTTCATTGTTGAA AAGGCTAAAATAAATAAAAATAGAAACGTTTATAAGTACTTATCAACAGTTAGCGATATAATGTGGCAGGTTGAAGAAGG TGATGTGCACAATACCCATAAGCACATTGTTGCTCAATTAGTTAAGCAGATTAATGCCTTGAAATTACACAATTCAAAGT GTGATGATGAGTATTTTTTATTTCCTTGTGGAATTAAAAAGATATCTAGTAGTAATACTGAGCTGACATTAGGTGTTTTT GACTCAATACAATCATTCTCTGATGATTTGCTTAATGAACATAATGTTGATTTAAGCTCTGTTTTGGATGAGATTTATTC ATACGTAAAGGATGAGTTCGAGTATATTTATACACCATCAGAAATAGATTATGATACTTATACAAAAATAGAAGGAAAAA CTATTCAATCTTTAATGGGGACTTCTGTTGATTCAATAATTAAAGATTGTATTGATGAAGGGGTTATTAAAGATATAAAC AGTGGTTTAGATGAGTTTCTTAGAAAAGTAGAGATCTATTTAGAAAAATATGAATATAAAAAACCTGCTAAAAGGCAGAC TTTATTCAATTTGACTCATCTAACATCAAAAATAATCGAGACATATTTTGAGTCAAAAGTTCTAAATTTAAGGTCTAACT CTGAACTTACTCCGATTTATAATTTTAGTTCAGGCGAGAAACGCAAAGCAATTATTGATTTAGCTAGAGCATTTATTTTA AATTCAGGAAGAGATTTACACAATAAAACGGTTGTTATTGCTATGGATGAGCCAGAGGTATCTCTTCATACTTCAGCTTG TTTTGAGCAGTTTGAAAAATTAGAAGAAATATCAAAAAATCGAGTACAAACACTTATCTCAACTCATTGGTACGGATTTT TCCCATCAGTATCGTCTGGTAATGCTGTTTATATTGCGGACTCGGAAGATAATAGAGTTTCTTTTTTGATTAACTTATCA AGATTCAGAGAGGATGTCAGATTAATACGTAATGAAACTCAAGGCAAAATGCCCAGTAATATTGAGCTTAAAAGTGTTAA TGACTTTGTTCAGTCTGTTATATCGTCAATTACTCGTAGTAATAAACGATGGATTATTTGTGAAGGCGCTTCAGATAAAA TATATTTAAATCATTTCTTGGAAGGTGAAGGTTTTAACATTCTTTCTGTTGGTGGAAGTAAGTATGTTAAAAAAGTTTAT GAATATATATATTTAGCGCTAGAGGATGAACGAAGCGATATTAAAGGTAAAGTTTACTTTCTTCTTGATACAGATAAAAA ATTCGAGGGTTATTCTGCAAAGGATTCGATGAAGAATCTTAGATTAAGGAGAATGCAAATAAACAGTTTGACCAAAGCTG TTGAGCTTTTAAAAGCATCTGATAATTCCCATTTCCCACCTACAGAAATTGAAAATGTTTTAAATTCAGAAATATTTAAA GAAGTGCTGGAATATTACTGCTCTACAGGTCACAAAGGGCTTCTTGAAAAAGTTGTTGATAGTTGCATTGGCTTTGAAAA TGAACTTGTTTCTGGAGTTGCATTTGACTTCAGAATCTCTGAATTAGCTTCTCTAGATGAATTTTTCGATCAGATTGGAA TGAAGGTTAAATTCGCAAAAAAATACTGCGAATTAGATGTGAATCGTAAAGTACCTAATTGGGTCAATGATATGAAAGAC TTTTTTTTGGATTGA
Upstream 100 bases:
>100_bases AGGGGAATTGGTACTGCCACAATAAAGTTATACTCATTAAATTAGCAGTTGATTTTGGCGGGTTTAATTCTGCTTCCTAT TTTTAAAAAAAGGAGTTACT
Downstream 100 bases:
>100_bases CATCTTACCGGCGCTAAGAGACAGGACATGCATAGCTTTTGAATGCGAAAAGTTAACTCTAATGCTGCAGACGTTCACCG ATCCCCTGCGAAGTTGCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 644; Mature: 644
Protein sequence:
>644_residues MIFSIFLRNFKIYRGWNYVPISTGDYFTAFIGDNGVGKSSILEALDTFFNRPMSEWNYNHSIIKSGFDREPNICPIFIVE KAKINKNRNVYKYLSTVSDIMWQVEEGDVHNTHKHIVAQLVKQINALKLHNSKCDDEYFLFPCGIKKISSSNTELTLGVF DSIQSFSDDLLNEHNVDLSSVLDEIYSYVKDEFEYIYTPSEIDYDTYTKIEGKTIQSLMGTSVDSIIKDCIDEGVIKDIN SGLDEFLRKVEIYLEKYEYKKPAKRQTLFNLTHLTSKIIETYFESKVLNLRSNSELTPIYNFSSGEKRKAIIDLARAFIL NSGRDLHNKTVVIAMDEPEVSLHTSACFEQFEKLEEISKNRVQTLISTHWYGFFPSVSSGNAVYIADSEDNRVSFLINLS RFREDVRLIRNETQGKMPSNIELKSVNDFVQSVISSITRSNKRWIICEGASDKIYLNHFLEGEGFNILSVGGSKYVKKVY EYIYLALEDERSDIKGKVYFLLDTDKKFEGYSAKDSMKNLRLRRMQINSLTKAVELLKASDNSHFPPTEIENVLNSEIFK EVLEYYCSTGHKGLLEKVVDSCIGFENELVSGVAFDFRISELASLDEFFDQIGMKVKFAKKYCELDVNRKVPNWVNDMKD FFLD
Sequences:
>Translated_644_residues MIFSIFLRNFKIYRGWNYVPISTGDYFTAFIGDNGVGKSSILEALDTFFNRPMSEWNYNHSIIKSGFDREPNICPIFIVE KAKINKNRNVYKYLSTVSDIMWQVEEGDVHNTHKHIVAQLVKQINALKLHNSKCDDEYFLFPCGIKKISSSNTELTLGVF DSIQSFSDDLLNEHNVDLSSVLDEIYSYVKDEFEYIYTPSEIDYDTYTKIEGKTIQSLMGTSVDSIIKDCIDEGVIKDIN SGLDEFLRKVEIYLEKYEYKKPAKRQTLFNLTHLTSKIIETYFESKVLNLRSNSELTPIYNFSSGEKRKAIIDLARAFIL NSGRDLHNKTVVIAMDEPEVSLHTSACFEQFEKLEEISKNRVQTLISTHWYGFFPSVSSGNAVYIADSEDNRVSFLINLS RFREDVRLIRNETQGKMPSNIELKSVNDFVQSVISSITRSNKRWIICEGASDKIYLNHFLEGEGFNILSVGGSKYVKKVY EYIYLALEDERSDIKGKVYFLLDTDKKFEGYSAKDSMKNLRLRRMQINSLTKAVELLKASDNSHFPPTEIENVLNSEIFK EVLEYYCSTGHKGLLEKVVDSCIGFENELVSGVAFDFRISELASLDEFFDQIGMKVKFAKKYCELDVNRKVPNWVNDMKD FFLD >Mature_644_residues MIFSIFLRNFKIYRGWNYVPISTGDYFTAFIGDNGVGKSSILEALDTFFNRPMSEWNYNHSIIKSGFDREPNICPIFIVE KAKINKNRNVYKYLSTVSDIMWQVEEGDVHNTHKHIVAQLVKQINALKLHNSKCDDEYFLFPCGIKKISSSNTELTLGVF DSIQSFSDDLLNEHNVDLSSVLDEIYSYVKDEFEYIYTPSEIDYDTYTKIEGKTIQSLMGTSVDSIIKDCIDEGVIKDIN SGLDEFLRKVEIYLEKYEYKKPAKRQTLFNLTHLTSKIIETYFESKVLNLRSNSELTPIYNFSSGEKRKAIIDLARAFIL NSGRDLHNKTVVIAMDEPEVSLHTSACFEQFEKLEEISKNRVQTLISTHWYGFFPSVSSGNAVYIADSEDNRVSFLINLS RFREDVRLIRNETQGKMPSNIELKSVNDFVQSVISSITRSNKRWIICEGASDKIYLNHFLEGEGFNILSVGGSKYVKKVY EYIYLALEDERSDIKGKVYFLLDTDKKFEGYSAKDSMKNLRLRRMQINSLTKAVELLKASDNSHFPPTEIENVLNSEIFK EVLEYYCSTGHKGLLEKVVDSCIGFENELVSGVAFDFRISELASLDEFFDQIGMKVKFAKKYCELDVNRKVPNWVNDMKD FFLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74276; Mature: 74276
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFSIFLRNFKIYRGWNYVPISTGDYFTAFIGDNGVGKSSILEALDTFFNRPMSEWNYNH CEEEEEECCEEEEECCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHCCCCH SIIKSGFDREPNICPIFIVEKAKINKNRNVYKYLSTVSDIMWQVEEGDVHNTHKHIVAQL HHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH VKQINALKLHNSKCDDEYFLFPCGIKKISSSNTELTLGVFDSIQSFSDDLLNEHNVDLSS HHHHHHHEECCCCCCCCEEEEECCHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHH VLDEIYSYVKDEFEYIYTPSEIDYDTYTKIEGKTIQSLMGTSVDSIIKDCIDEGVIKDIN HHHHHHHHHHHHHHEEECCCCCCCCCEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH SGLDEFLRKVEIYLEKYEYKKPAKRQTLFNLTHLTSKIIETYFESKVLNLRSNSELTPIY HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEE NFSSGEKRKAIIDLARAFILNSGRDLHNKTVVIAMDEPEVSLHTSACFEQFEKLEEISKN ECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH RVQTLISTHWYGFFPSVSSGNAVYIADSEDNRVSFLINLSRFREDVRLIRNETQGKMPSN HHHHHHHHHHCEECCCCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCC IELKSVNDFVQSVISSITRSNKRWIICEGASDKIYLNHFLEGEGFNILSVGGSKYVKKVY CEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCHHHHHHHH EYIYLALEDERSDIKGKVYFLLDTDKKFEGYSAKDSMKNLRLRRMQINSLTKAVELLKAS HHHHHEEECCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC DNSHFPPTEIENVLNSEIFKEVLEYYCSTGHKGLLEKVVDSCIGFENELVSGVAFDFRIS CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHEEHHHHH ELASLDEFFDQIGMKVKFAKKYCELDVNRKVPNWVNDMKDFFLD HHHHHHHHHHHHCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure MIFSIFLRNFKIYRGWNYVPISTGDYFTAFIGDNGVGKSSILEALDTFFNRPMSEWNYNH CEEEEEECCEEEEECCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHCCCCH SIIKSGFDREPNICPIFIVEKAKINKNRNVYKYLSTVSDIMWQVEEGDVHNTHKHIVAQL HHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHH VKQINALKLHNSKCDDEYFLFPCGIKKISSSNTELTLGVFDSIQSFSDDLLNEHNVDLSS HHHHHHHEECCCCCCCCEEEEECCHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCHHH VLDEIYSYVKDEFEYIYTPSEIDYDTYTKIEGKTIQSLMGTSVDSIIKDCIDEGVIKDIN HHHHHHHHHHHHHHEEECCCCCCCCCEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH SGLDEFLRKVEIYLEKYEYKKPAKRQTLFNLTHLTSKIIETYFESKVLNLRSNSELTPIY HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEE NFSSGEKRKAIIDLARAFILNSGRDLHNKTVVIAMDEPEVSLHTSACFEQFEKLEEISKN ECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH RVQTLISTHWYGFFPSVSSGNAVYIADSEDNRVSFLINLSRFREDVRLIRNETQGKMPSN HHHHHHHHHHCEECCCCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCC IELKSVNDFVQSVISSITRSNKRWIICEGASDKIYLNHFLEGEGFNILSVGGSKYVKKVY CEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCHHHHHHHH EYIYLALEDERSDIKGKVYFLLDTDKKFEGYSAKDSMKNLRLRRMQINSLTKAVELLKAS HHHHHEEECCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC DNSHFPPTEIENVLNSEIFKEVLEYYCSTGHKGLLEKVVDSCIGFENELVSGVAFDFRIS CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHEEHHHHH ELASLDEFFDQIGMKVKFAKKYCELDVNRKVPNWVNDMKDFFLD HHHHHHHHHHHHCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA