Definition Shewanella sp. MR-4 chromosome, complete genome.
Accession NC_008321
Length 4,706,287

Click here to switch to the map view.

The map label for this gene is 113969100

Identifier: 113969100

GI number: 113969100

Start: 878882

End: 880066

Strand: Direct

Name: 113969100

Synonym: Shewmr4_0756

Alternate gene names: NA

Gene position: 878882-880066 (Clockwise)

Preceding gene: 113969099

Following gene: 113969104

Centisome position: 18.67

GC content: 47.68

Gene sequence:

>1185_bases
ATGCGTTTGAGTGTTATTGGCTCCCTGCTATCGGGGCTGTTATTACTCCCAAGTGCCAATAGTGTTGGCGAGTCACTTGA
AACTGCAATTGTGCCGGAAAGCGCGCAAGGCGGTCAGTCAGTTAAGCTTGAAAGCCAAACTGCATCTTCAGAATCTAAGC
TTGGGGAGATTAAGAGCTTAATCCAAGCGGCGATAATGGATTCGCCGCAGCCATTTAGCGGTAGCGTTATTCTACTTGAA
GAGGGGAAACCACTGCTTGAATTACAAAAGGGCGAAGGTATCAATCAAGATTCGCGGTTTGTAATGGCATCGCTCTCGAA
ACAAATTACCGCAACGCTAGTGTTGCAGGCACTCGATGCGGGGAAACTCGATTTAAATCAAACGCTAAACCATTACCTTT
TTGGCGATCTTGAGGCGGAATCTAAGGCGCTAAAAGCCACTGATGCGGGCGCCAATGCGGGGGATTTGAATCCCAACCGT
TATGATGAGCGCATTACTTTGCACCAACTGCTGAACCATACATCGGGTGTTGCCAGCATTGGACAGGCCAATCGCTTCGA
GCCGGGTAGCCAATTTGAATACTCTAATTTGGGTTATTCACTGCTTGGGCAAGTGCTCGAGAAGGTGAATCACCAATCCT
TTACCGAGCAGCTGGCACAATTTGCTGCGCGGTACCAACTCAATGGCTTAAGTGCCGAGCTTGGCAGCCTTGAGGTGATT
CATGCCAAAGTGCCAAGTCTGGCAGTGGGATTGCAGGAAAGCGAATTGATTGCGCCTGCTGAGCTGGTGATTGATGAAGC
GTTATTGCCCGCAGGGGGATTAATTGCCTCGACGGCTACTTATGCCGCCTTTCAGCAGCAATTACATGCTGGCAAGTTGT
TGAGCCCTGAGAGTTATCAGCGGATGACCACTGCGTATATCGAGTTGCCATTTTTGTGGCCGAATATGCGCTATGGTTAT
GGGATAAGGATCAATAAGGACAATGACTTGGTCGAATATAGCCATACGGGGTATGTTTCGGGTTATATGTCGATGACGCT
GCATTATCCCGAGTTTAATCTGGACTTGGTAATGCTGGAAAATCTCTCCTTAAACCTTAACGACCGTAACCGGGTATTTG
AACTGCATAATCAAATACGCCAAATCATTCGTAGTCAGTTGCTTGCTAAAGCTTTTAAGGCTTAA

Upstream 100 bases:

>100_bases
TAACTGGCACTCCAAACCTCAAGTCACACTTAAGGTGTGCCTGTGATAAGCTGCCGCTTTCTAATCAGGCTGTATTTGCT
AATTAAGTTAAGGATAACCC

Downstream 100 bases:

>100_bases
GACTTGCCATTATGTTGGCTAATAGCCATCCAAGTGTGCAGGTGCGAAGGTAGGCTTAACTTCGAAAGCATAAAGCCCCT
TTAAATGACGATATAAAAGG

Product: beta-lactamase

Products: NA

Alternate protein names: Secreted Peptidase; Amino Acid Adenylation; Beta-Lactamase Class C-Like Protein; Serine-Type D-Ala-D-Ala Carboxypeptidase; FmtA-Like Protein; Beta-Lactamase Class C Family Protein; Beta-LactamaseCopper Amine Oxidase-Like Protein

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSLIQAAIMDSPQPFSGSVILLE
EGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDAGKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNR
YDERITLHQLLNHTSGVASIGQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI
HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQRMTTAYIELPFLWPNMRYGY
GIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLENLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA

Sequences:

>Translated_394_residues
MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSLIQAAIMDSPQPFSGSVILLE
EGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDAGKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNR
YDERITLHQLLNHTSGVASIGQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI
HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQRMTTAYIELPFLWPNMRYGY
GIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLENLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA
>Mature_394_residues
MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSLIQAAIMDSPQPFSGSVILLE
EGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDAGKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNR
YDERITLHQLLNHTSGVASIGQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI
HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQRMTTAYIELPFLWPNMRYGY
GIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLENLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42993; Mature: 42993

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSL
CCHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
IQAAIMDSPQPFSGSVILLEEGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDA
HHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
GKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNRYDERITLHQLLNHTSGVASI
CCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHC
GQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI
CCCCCCCCCCCCCHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQ
EECCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
RMTTAYIELPFLWPNMRYGYGIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLE
HHEEEEEEEEEECCCCCCCEEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCEEEEEEE
NLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA
CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLSVIGSLLSGLLLLPSANSVGESLETAIVPESAQGGQSVKLESQTASSESKLGEIKSL
CCHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
IQAAIMDSPQPFSGSVILLEEGKPLLELQKGEGINQDSRFVMASLSKQITATLVLQALDA
HHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
GKLDLNQTLNHYLFGDLEAESKALKATDAGANAGDLNPNRYDERITLHQLLNHTSGVASI
CCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHC
GQANRFEPGSQFEYSNLGYSLLGQVLEKVNHQSFTEQLAQFAARYQLNGLSAELGSLEVI
CCCCCCCCCCCCCHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
HAKVPSLAVGLQESELIAPAELVIDEALLPAGGLIASTATYAAFQQQLHAGKLLSPESYQ
EECCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH
RMTTAYIELPFLWPNMRYGYGIRINKDNDLVEYSHTGYVSGYMSMTLHYPEFNLDLVMLE
HHEEEEEEEEEECCCCCCCEEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCEEEEEEE
NLSLNLNDRNRVFELHNQIRQIIRSQLLAKAFKA
CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA