| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is fhs [H]
Identifier: 113968905
GI number: 113968905
Start: 643936
End: 645648
Strand: Direct
Name: fhs [H]
Synonym: Shewmr4_0561
Alternate gene names: 113968905
Gene position: 643936-645648 (Clockwise)
Preceding gene: 113968903
Following gene: 113968907
Centisome position: 13.68
GC content: 53.36
Gene sequence:
>1713_bases ATGCTAACCGATATGGATATTTCGCGCCGTGCGCCCCTAAAAGATATCGCAGTGCTTGGCGCCGAGTTTGGGTTATTGCC CGATGAGATGCAGCTATTTGGCAAGACAAAAGCCAAGGTCGATTTACGTGTGCAGCAGCGCTTAGCAGAGCAGCAACAGG GTAAGCTGATCATTGTCACCGCCGTGACACCAACGCCCCACGGCGAAGGCAAAACCGTCACCACCATTGGCTTAACCCAA TCCCTCAAAGCGCTTGGTAACAAGGTGTGCGCCTGTATTCGCCAGCCCAGTATGGGCCCGGTATTTGGGGTGAAAGGTGG TGCAGCTGGTGGCGGTTACGCCCAAGTGGTGCCCATGCAGGAGCTGAATCTGCATCTAACGGGTGATATTCATGCCGTCA GCAATGCCCATAATCTTGGCGCGGCGGCGATAGCCTCTCGGCTATATCATGAAACACGTTTAGGTAAGGCCGAATTTGAG CTGCAGTCTGGGCAGAATTACCTAGATATAGCGCCTAATGGCATCCGTTGGCACAGGGTGGTCGACCATAACGATCGCTG CTTACGTGAAATTGAAGTTGGGCTGGGTGAAAATAATGGCCCAGCTTACACCTCTGGCTTTGATATTACCGCTGCCTCTG AGTTAATGGCGATTCTGGCGCTCAGTCGTAATCTGGCGGATATGCGCGCGCGTATTGGCAAGCTTGTGCTGGCAGTCAAT CGTCAAGGTGCGGCTATTAGCGCGGAAGACCTTGGGGTTGCCGGCGCGATGACGGCGATCATGGCGGATGCGGTAAAACC CACCTTGATGCAGACTTTAAACGGTGCGCCTTGTCTTATTCACGCAGGGCCATTTGCGAATATTGCCCATGGCAACTCGT CGGTGATTGCCGACGATATCGCCTTAAAGCTGGCCGATTTTGTGGTGACGGAAGGCGGTTTTGGCTCCGATATGGGGTTT GAGAAATTTTGTAATATCAAGGCGCGCCAGTCGGGATTAACCCCGAGCGCTGCGGTGTTAGTGACTACCTTAAAGGCATT GAAGGCCAATAGCGGCTTAACGTCGGATGCGGATATCAATGCGCCCGACCAAGCCCGTCTCGAGGCGGGATTTGCCAACT TAAACTGGCATATCAACAATGTGGCGCGTTACGGTATTCCCGTTGTGGTGGCTATTAATCGCTTTGCAACCGATACGGAT GCCGAGCTTAACTGGTTGATTGAAGCCGTTGCGGGCACTGCCGCCTTTGGCTGCGAGCTTAGCGAGGCTTTCAGCCAAGG TGAGGCGGGGGCATTGGCCTTGGCGCAAACCGTCATGCGCGCCTGTGAGCAGCCAAGCGAGTTTACCCTGCTATATCCCG ATGACATGGCGCTTGAGGCGAAATTATCGACCTTAGCTGAAGTCGGCTATGGCGCTGCAGGGGTGAGTTTATCCGAGGCG GCTAAGCTCCAATTACAAGAACTCAGTGCCCTTGGTTACGCCGATTTACCCGTCTGCATGGCAAAAACACCCTTATCCAT TAGCCATGACCCTCAACTTAAAGGCGTACCGCAGGGTTTTATCGTGCCAGTGCGCGAGTTAGTGTTAAATGCTGGAGCCG GATTTATTACCGCGCTGGTGGGGAATGTGATGACTATGCCAGGGCTTGGATTAGTTCCTGGCTATTTAAAGATTGATATC GGCGCAGATGGCGAGATTACTGGCTTAGGTTAA
Upstream 100 bases:
>100_bases ATCAGCCGTTGCTGATACTTACCGATTTTGCATACCTATTTTGTATTTCCTGCTCGCATGCCTAGCGTGGATACCAAAAT ACCCAAGGGAGAGATGACCC
Downstream 100 bases:
>100_bases TCGATTAACAGTTTGAATATCATGAAAAAGGCGCAATCTAGGATTGCGCCTTTTGTTTACTTCTCGCCTTGGCGAAGCGT TATTTACTGGTTTGGTAAAT
Product: formate--tetrahydrofolate ligase
Products: NA
Alternate protein names: Formyltetrahydrofolate synthetase; FHS; FTHFS [H]
Number of amino acids: Translated: 570; Mature: 570
Protein sequence:
>570_residues MLTDMDISRRAPLKDIAVLGAEFGLLPDEMQLFGKTKAKVDLRVQQRLAEQQQGKLIIVTAVTPTPHGEGKTVTTIGLTQ SLKALGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSNAHNLGAAAIASRLYHETRLGKAEFE LQSGQNYLDIAPNGIRWHRVVDHNDRCLREIEVGLGENNGPAYTSGFDITAASELMAILALSRNLADMRARIGKLVLAVN RQGAAISAEDLGVAGAMTAIMADAVKPTLMQTLNGAPCLIHAGPFANIAHGNSSVIADDIALKLADFVVTEGGFGSDMGF EKFCNIKARQSGLTPSAAVLVTTLKALKANSGLTSDADINAPDQARLEAGFANLNWHINNVARYGIPVVVAINRFATDTD AELNWLIEAVAGTAAFGCELSEAFSQGEAGALALAQTVMRACEQPSEFTLLYPDDMALEAKLSTLAEVGYGAAGVSLSEA AKLQLQELSALGYADLPVCMAKTPLSISHDPQLKGVPQGFIVPVRELVLNAGAGFITALVGNVMTMPGLGLVPGYLKIDI GADGEITGLG
Sequences:
>Translated_570_residues MLTDMDISRRAPLKDIAVLGAEFGLLPDEMQLFGKTKAKVDLRVQQRLAEQQQGKLIIVTAVTPTPHGEGKTVTTIGLTQ SLKALGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSNAHNLGAAAIASRLYHETRLGKAEFE LQSGQNYLDIAPNGIRWHRVVDHNDRCLREIEVGLGENNGPAYTSGFDITAASELMAILALSRNLADMRARIGKLVLAVN RQGAAISAEDLGVAGAMTAIMADAVKPTLMQTLNGAPCLIHAGPFANIAHGNSSVIADDIALKLADFVVTEGGFGSDMGF EKFCNIKARQSGLTPSAAVLVTTLKALKANSGLTSDADINAPDQARLEAGFANLNWHINNVARYGIPVVVAINRFATDTD AELNWLIEAVAGTAAFGCELSEAFSQGEAGALALAQTVMRACEQPSEFTLLYPDDMALEAKLSTLAEVGYGAAGVSLSEA AKLQLQELSALGYADLPVCMAKTPLSISHDPQLKGVPQGFIVPVRELVLNAGAGFITALVGNVMTMPGLGLVPGYLKIDI GADGEITGLG >Mature_570_residues MLTDMDISRRAPLKDIAVLGAEFGLLPDEMQLFGKTKAKVDLRVQQRLAEQQQGKLIIVTAVTPTPHGEGKTVTTIGLTQ SLKALGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQELNLHLTGDIHAVSNAHNLGAAAIASRLYHETRLGKAEFE LQSGQNYLDIAPNGIRWHRVVDHNDRCLREIEVGLGENNGPAYTSGFDITAASELMAILALSRNLADMRARIGKLVLAVN RQGAAISAEDLGVAGAMTAIMADAVKPTLMQTLNGAPCLIHAGPFANIAHGNSSVIADDIALKLADFVVTEGGFGSDMGF EKFCNIKARQSGLTPSAAVLVTTLKALKANSGLTSDADINAPDQARLEAGFANLNWHINNVARYGIPVVVAINRFATDTD AELNWLIEAVAGTAAFGCELSEAFSQGEAGALALAQTVMRACEQPSEFTLLYPDDMALEAKLSTLAEVGYGAAGVSLSEA AKLQLQELSALGYADLPVCMAKTPLSISHDPQLKGVPQGFIVPVRELVLNAGAGFITALVGNVMTMPGLGLVPGYLKIDI GADGEITGLG
Specific function: Unknown
COG id: COG2759
COG function: function code F; Formyltetrahydrofolate synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the formate--tetrahydrofolate ligase family [H]
Homologues:
Organism=Homo sapiens, GI222136639, Length=617, Percent_Identity=48.6223662884927, Blast_Score=509, Evalue=1e-144, Organism=Homo sapiens, GI36796743, Length=612, Percent_Identity=46.4052287581699, Blast_Score=485, Evalue=1e-137, Organism=Homo sapiens, GI310124614, Length=81, Percent_Identity=44.4444444444444, Blast_Score=81, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17568737, Length=620, Percent_Identity=48.0645161290323, Blast_Score=517, Evalue=1e-147, Organism=Caenorhabditis elegans, GI17568739, Length=620, Percent_Identity=48.0645161290323, Blast_Score=517, Evalue=1e-147, Organism=Saccharomyces cerevisiae, GI6321643, Length=626, Percent_Identity=45.3674121405751, Blast_Score=478, Evalue=1e-135, Organism=Saccharomyces cerevisiae, GI6319558, Length=629, Percent_Identity=42.7662957074722, Blast_Score=463, Evalue=1e-131, Organism=Drosophila melanogaster, GI62472483, Length=618, Percent_Identity=44.4983818770227, Blast_Score=468, Evalue=1e-132, Organism=Drosophila melanogaster, GI45551871, Length=618, Percent_Identity=44.4983818770227, Blast_Score=468, Evalue=1e-132, Organism=Drosophila melanogaster, GI24645718, Length=618, Percent_Identity=44.4983818770227, Blast_Score=467, Evalue=1e-132, Organism=Drosophila melanogaster, GI17137370, Length=618, Percent_Identity=44.4983818770227, Blast_Score=467, Evalue=1e-132,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000559 - InterPro: IPR020628 [H]
Pfam domain/function: PF01268 FTHFS [H]
EC number: =6.3.4.3 [H]
Molecular weight: Translated: 59683; Mature: 59683
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS00721 FTHFS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTDMDISRRAPLKDIAVLGAEFGLLPDEMQLFGKTKAKVDLRVQQRLAEQQQGKLIIVT CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEEEE AVTPTPHGEGKTVTTIGLTQSLKALGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQ EECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEHH ELNLHLTGDIHAVSNAHNLGAAAIASRLYHETRLGKAEFELQSGQNYLDIAPNGIRWHRV HCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEE VDHNDRCLREIEVGLGENNGPAYTSGFDITAASELMAILALSRNLADMRARIGKLVLAVN ECCCHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHEEEEEE RQGAAISAEDLGVAGAMTAIMADAVKPTLMQTLNGAPCLIHAGPFANIAHGNSSVIADDI CCCCEECHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCEECCCCCCEEHHHH ALKLADFVVTEGGFGSDMGFEKFCNIKARQSGLTPSAAVLVTTLKALKANSGLTSDADIN HHHHHHHHEECCCCCCCCCHHHHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC APDQARLEAGFANLNWHINNVARYGIPVVVAINRFATDTDAELNWLIEAVAGTAAFGCEL CCCHHHHHCCCEEEEEEEECHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCH SEAFSQGEAGALALAQTVMRACEQPSEFTLLYPDDMALEAKLSTLAEVGYGAAGVSLSEA HHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHH AKLQLQELSALGYADLPVCMAKTPLSISHDPQLKGVPQGFIVPVRELVLNAGAGFITALV HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH GNVMTMPGLGLVPGYLKIDIGADGEITGLG HHHHHCCCCCCCCCEEEEEECCCCCEECCC >Mature Secondary Structure MLTDMDISRRAPLKDIAVLGAEFGLLPDEMQLFGKTKAKVDLRVQQRLAEQQQGKLIIVT CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEEEE AVTPTPHGEGKTVTTIGLTQSLKALGNKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMQ EECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEEEHH ELNLHLTGDIHAVSNAHNLGAAAIASRLYHETRLGKAEFELQSGQNYLDIAPNGIRWHRV HCCEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEE VDHNDRCLREIEVGLGENNGPAYTSGFDITAASELMAILALSRNLADMRARIGKLVLAVN ECCCHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHEEEEEE RQGAAISAEDLGVAGAMTAIMADAVKPTLMQTLNGAPCLIHAGPFANIAHGNSSVIADDI CCCCEECHHHCCHHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCEECCCCCCEEHHHH ALKLADFVVTEGGFGSDMGFEKFCNIKARQSGLTPSAAVLVTTLKALKANSGLTSDADIN HHHHHHHHEECCCCCCCCCHHHHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC APDQARLEAGFANLNWHINNVARYGIPVVVAINRFATDTDAELNWLIEAVAGTAAFGCEL CCCHHHHHCCCEEEEEEEECHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCH SEAFSQGEAGALALAQTVMRACEQPSEFTLLYPDDMALEAKLSTLAEVGYGAAGVSLSEA HHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHH AKLQLQELSALGYADLPVCMAKTPLSISHDPQLKGVPQGFIVPVRELVLNAGAGFITALV HHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH GNVMTMPGLGLVPGYLKIDIGADGEITGLG HHHHHCCCCCCCCCEEEEEECCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]