| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is nudH [C]
Identifier: 113968811
GI number: 113968811
Start: 529716
End: 530123
Strand: Direct
Name: nudH [C]
Synonym: Shewmr4_0467
Alternate gene names: 113968811
Gene position: 529716-530123 (Clockwise)
Preceding gene: 113968810
Following gene: 113968812
Centisome position: 11.26
GC content: 50.25
Gene sequence:
>408_bases ATGGCATTTGAAGATAGGTTTCGGCTCAGTAGCCATGGGGTGATCACTAACGATGCAGGCCAAGTGTTACTCCTTAAGGC AAATTACGGCAATTGCGCCTGGGGCTTACCCGGCGGCGCCTTAGAGCCCGGTGAAACGATTCACGAAGCCCTGCTGCGCG AATGCCAAGAGGAACTGGGGCTGGCGGTGAACGTCCACTACCTAAGCGGCGTGTATTATCACAGCACCTATCAATCCCAA GCTTTTATCTTTCGTTGTGAGTTTGCATCTGCCGACGCCGTGATTCGCTTAAGCCATGAACACTCAGAGTTTGCCTTCCA TGATATCGACACACTTAGCGCGGTCCAGCAGCAAAGAGTTAAAGATTGTCTTAATTTCAACGGTGTTGTCGTGAGTGCAA AGTTTTAA
Upstream 100 bases:
>100_bases GTAAAATGGTTTAAGACGGGTTTTGCCTCAGGCAAGCTTGCCAGCTGCAATACCTTTAATCACAACTCGTGATAACACTG CCTTAGCGTGGGATTGAAAC
Downstream 100 bases:
>100_bases GGCTTTGTCAGTAAGTATCTACAACAATAAAAAGAGACAGCAATGAAACTCGGTCGTAACGATCCTTGCCATTGTGGCAG TGGTAAAAAGTTTAAACGTT
Product: NUDIX hydrolase
Products: NA
Alternate protein names: MutT/Nudix Family Protein; MutT-Like Protein; NUDIX Family Hydrolase
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MAFEDRFRLSSHGVITNDAGQVLLLKANYGNCAWGLPGGALEPGETIHEALLRECQEELGLAVNVHYLSGVYYHSTYQSQ AFIFRCEFASADAVIRLSHEHSEFAFHDIDTLSAVQQQRVKDCLNFNGVVVSAKF
Sequences:
>Translated_135_residues MAFEDRFRLSSHGVITNDAGQVLLLKANYGNCAWGLPGGALEPGETIHEALLRECQEELGLAVNVHYLSGVYYHSTYQSQ AFIFRCEFASADAVIRLSHEHSEFAFHDIDTLSAVQQQRVKDCLNFNGVVVSAKF >Mature_134_residues AFEDRFRLSSHGVITNDAGQVLLLKANYGNCAWGLPGGALEPGETIHEALLRECQEELGLAVNVHYLSGVYYHSTYQSQA FIFRCEFASADAVIRLSHEHSEFAFHDIDTLSAVQQQRVKDCLNFNGVVVSAKF
Specific function: Preferentially Hydrolyzes Diadenosine Penta-Phosphate With ATP As One Of The Reaction Products. Also Able To Hydrolyze Diadenosine Hexa- And Tetra-Phosphate. Has No Activity On Diadenosine Tri-Phosphate, Adp-Ribose, NADH And Udp-Glucose. In The Meningitis
COG id: COG0494
COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.6.1.- [C]
Molecular weight: Translated: 15009; Mature: 14878
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFEDRFRLSSHGVITNDAGQVLLLKANYGNCAWGLPGGALEPGETIHEALLRECQEELG CCCCCCEEECCCCEEECCCCCEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCC LAVNVHYLSGVYYHSTYQSQAFIFRCEFASADAVIRLSHEHSEFAFHDIDTLSAVQQQRV CEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHH KDCLNFNGVVVSAKF HHHHCCCCEEEEECC >Mature Secondary Structure AFEDRFRLSSHGVITNDAGQVLLLKANYGNCAWGLPGGALEPGETIHEALLRECQEELG CCCCCEEECCCCEEECCCCCEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCC LAVNVHYLSGVYYHSTYQSQAFIFRCEFASADAVIRLSHEHSEFAFHDIDTLSAVQQQRV CEEEEEECCEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHH KDCLNFNGVVVSAKF HHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA