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The map label for this gene is yciR [C]

Identifier: 113968802

GI number: 113968802

Start: 520634

End: 521620

Strand: Direct

Name: yciR [C]

Synonym: Shewmr4_0458

Alternate gene names: 113968802

Gene position: 520634-521620 (Clockwise)

Preceding gene: 113968801

Following gene: 113968808

Centisome position: 11.06

GC content: 50.46

Gene sequence:

>987_bases
GTGGTAGCGGATTCTGCAGCACAAATAAAGCAACTTCAGGCCGAAATCGCCGAACTTAAACGTGAAAATGCGCGGTTAAC
GGCGCTCAATAATCGCGCCGAAGAAAAACTGTTTGCCGCCCTCGATGGCAATGGCTTGTGTTTGTGGGAGCAGCATGTTC
CCAGTGGCAATCTCACCCTGTTCAATGTGAAGTGGGGCGAACTGCTCGGCTTTAGCCGCGAGGAGCTTCGCGCCCATGTC
GACAGCTGGAAAAGCAAACTTCATCCAGAGGATAAAGACTGGGTAATCAAAGCCTTTGAAGACCATGTGAATGGTAAGGC
CGATTATTATCAGGTCGTACATCGCATGCTGCACAAAGATGGCAGCATCACTTGGGTGTCGGATCGTGGCCGCATTGTTG
AGCGTCTACCCGATGGCACGCCGCTGCGAATGATGGGCAGCCATATCGATATCACTCAAGAAAAGCGCTACGAGCTGGAT
TTAGCTCGGTTAGCTCATAGCGATCCTCTCACCAACCTGATGAACCGCCAAGCCATCACCACGGCCTTCGATGAGTTATT
GCAACCCGGCCAGCGTGGGGCGTTATTCTTTATCGATCTTGATGGTTTTAAAGCCTTAAATGATCACCATGGTCACAAGT
TTGGCGATAACTTATTGGTGCATGTGGCGCATTCCTTAGTGGAGCATTCGGGTGCACAGGCAAAGATCGCGCGGCTCGGC
GGGGACGAGTTTGTGATTGTCCTGCCCACTTCGGATATCGAAGCCTTAGGTATGCTCGCGCAATCCTTATTGGATGTTTA
TCGACAACGTTTCTTACTCGATGGTTGCGAGGTGGCGATAAGCCTGAGTATTGGTATCGATATTTTTGAGTACGGTGATC
GTTTTGCTCAAAGCTGCGATCGCGCCGATGCCGCTATGTATCGTATTAAACACCAAGGGAAAAACGGCTACAGTTTCTCT
CGGAATGAGAGCGCTATTGACCGTTAA

Upstream 100 bases:

>100_bases
TTGTCAGCCCCCCTTGGCTTTATCCTTTTTACTATGTCCCTTCGGCTTTAACTGTTTTACACTGGACGAAAATCCCCCAA
CCTAACAACAGAGACTTTTC

Downstream 100 bases:

>100_bases
TCGGCGGCAGATGCGCCTAGCTTGCGCGTCTTTATGAAGCGACATTTCACAGCTGACAGCCCCACACCTCAACGGCGGCA
TCGTGTTTGTTCGGCGGGCC

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTLFNVKWGELLGFSREELRAHV
DSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKDGSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELD
LARLAHSDPLTNLMNRQAITTAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
GDEFVIVLPTSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFAQSCDRADAAMYRIKHQGKNGYSFS
RNESAIDR

Sequences:

>Translated_328_residues
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTLFNVKWGELLGFSREELRAHV
DSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKDGSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELD
LARLAHSDPLTNLMNRQAITTAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
GDEFVIVLPTSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFAQSCDRADAAMYRIKHQGKNGYSFS
RNESAIDR
>Mature_328_residues
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTLFNVKWGELLGFSREELRAHV
DSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKDGSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELD
LARLAHSDPLTNLMNRQAITTAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
GDEFVIVLPTSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFAQSCDRADAAMYRIKHQGKNGYSFS
RNESAIDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081881, Length=222, Percent_Identity=30.6306306306306, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788381, Length=200, Percent_Identity=33, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=35.6687898089172, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=154, Percent_Identity=32.4675324675325, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082007, Length=182, Percent_Identity=31.8681318681319, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI87081921, Length=169, Percent_Identity=26.0355029585799, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787802, Length=208, Percent_Identity=26.4423076923077, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081977, Length=125, Percent_Identity=34.4, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 36972; Mature: 36972

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTL
CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHEEEEECCCEEEEEECCCCCCCEEE
FNVKWGELLGFSREELRAHVDSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKD
EEECHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
GSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELDLARLAHSDPLTNLMNRQAIT
CCEEEECCCCHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
TAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
HHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
GDEFVIVLPTSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFAQSCD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHH
RADAAMYRIKHQGKNGYSFSRNESAIDR
HHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTL
CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHEEEEECCCEEEEEECCCCCCCEEE
FNVKWGELLGFSREELRAHVDSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKD
EEECHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
GSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELDLARLAHSDPLTNLMNRQAIT
CCEEEECCCCHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
TAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
HHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
GDEFVIVLPTSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFAQSCD
CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHH
RADAAMYRIKHQGKNGYSFSRNESAIDR
HHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]