BacMap

Definition	Shewanella sp. MR-4 chromosome, complete genome.
Accession	NC_008321
Length	4,706,287

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The map label for this gene is rhlB [H]

Identifier: 113968755

GI number: 113968755

Start: 457491

End: 458810

Strand: Direct

Name: rhlB [H]

Synonym: Shewmr4_0411

Alternate gene names: 113968755

Gene position: 457491-458810 (Clockwise)

Preceding gene: 113968752

Following gene: 113968756

Centisome position: 9.72

GC content: 46.82

Gene sequence:

>1320_bases
ATGAGCCAAACACATTTATCTAATCAAAAATTTGCCGACCTTCCTCTACATCCAGAGGTAAAACAGGCCCTTGCCGAAAA
CGGCTTCGAATTTTGTACGCCAATTCAGGCGTTATCATTACCCGTATTACTTCAATCAAAAGATATCGCCGGCCAAGCTC
AAACGGGCACAGGTAAGACAATGGCGTTTTTGGTTGCCACATTTAACCATTTATTATCGACGCCAATTCCTGAAAACCGT
CAGCTTAATCAGCCGCGCGCCATCATTATGGCCCCAACTCGCGAGCTGGCGATTCAAATTGCAAAAGACGCGATTCTACT
TGCCAAGCATACTCACTTAAAGGTGGGGATTGTTTACGGTGGCGAGAGTTATGATGTTCAGCGTAAAGTACTCGATCAAG
GTGTTGATATCTTAATCGGGACGACTGGACGTATTATTGACTATGTGCGTCAGGGCATTATTAGCTTAAATGCGATCCAA
GCCGTAGTGTTAGACGAAGCCGATCGCATGTTCGACCTCGGTTTTATCAAGGACATTCGTTTCCTGTTCCGACGTATGCC
CAATGCCGATCAGCGTCTGAACATGCTGTTCTCGGCGACACTTTCGATGAAGGTGCAGGAACTTGCCTATGATCATATGA
ATGATCCTGTGAAAGTCGAAATTGCCCCAGAAGAAAAAACCTCCAAGAACATCAAAGAAGAAATTTTCTATCCCTCCCAA
GAAGATAAAATTCGTTTACTGCTGACATTGATTGAAGAAGATTGGCCCGAGAAGGCCATTGTTTTTTCAAACACTAAGCA
CAGCTGTGAGAACCTATGGTCTTGGCTTGAAGGGGATGGACATCGCGTTGGTTTGCTGACGGGTGATGTACCGCAGAAGA
AACGTATTCGTATCCTGGAGCAATTTACTCAAGGCCAACTAGATATTCTGGTCGCGACCGATGTTGCTGCACGTGGACTA
CATATCTCCGATGTTTCTCATGTCTACAATTATGATTTACCTGATGATTGTGAGGACTATGTTCATCGTATCGGTCGTAC
GGGCCGTGCGGGTAACAAAGGCGTATCTGTTAGTTTCGCCTGTGAAGAATACGCACTGAATCTGCCTGCGATTGAAAGCT
ATATCAATCACTCCATTCCTGTGAGTAATTATGACCGTGATGCGCTGCTGGATGATATTCCACCGCCGGTTAAAATTCAT
CGCAAACACCCCGCTGGGGCGCGCAATTTACGTGAGCGCTCTGGAGCTGGTCGACCTCAAGGTGCCCATCGCAGTGGTGG
CCGTCCACCTCGTCATGACAGGACGCGTAGACAGCCGTAA

Upstream 100 bases:

>100_bases
TATTGGGGCTGAAAAATAGCTTTTCAAGTTACCTTTTTACAATGTGGCTATTTCAAACGATCGAGTATCTTATTGCAACC
CCAAATGGTATGCTTGCGCT

Downstream 100 bases:

>100_bases
ATGCCAACACCCGCTTATGCCGCCATTACTTTAGGCTCTAACAGTTTTAATATGCTGATCGCTAAGACAAAAGGCGGTCG
GCCACATATTATTGCTAAAT

Product: ATP-dependent RNA helicase RhlB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENR
QLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQ
AVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGL
HISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIESYINHSIPVSNYDRDALLDDIPPPVKIH
RKHPAGARNLRERSGAGRPQGAHRSGGRPPRHDRTRRQP

Sequences:

>Translated_439_residues
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENR
QLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQ
AVVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGL
HISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIESYINHSIPVSNYDRDALLDDIPPPVKIH
RKHPAGARNLRERSGAGRPQGAHRSGGRPPRHDRTRRQP
>Mature_438_residues
SQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENRQ
LNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYGGESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQA
VVLDEADRMFDLGFIKDIRFLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQE
DKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLH
ISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALNLPAIESYINHSIPVSNYDRDALLDDIPPPVKIHR
KHPAGARNLRERSGAGRPQGAHRSGGRPPRHDRTRRQP

Specific function: Can carry out ATP-dependent unwinding of double stranded RNA. Has a role in RNA decay. Involved in the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation [H]

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI41327771, Length=403, Percent_Identity=36.2282878411911, Blast_Score=236, Evalue=4e-62,
Organism=Homo sapiens, GI301171467, Length=368, Percent_Identity=36.4130434782609, Blast_Score=234, Evalue=9e-62,
Organism=Homo sapiens, GI301171475, Length=368, Percent_Identity=36.4130434782609, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI87196351, Length=368, Percent_Identity=36.4130434782609, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI169881239, Length=373, Percent_Identity=35.9249329758713, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI13514809, Length=373, Percent_Identity=35.9249329758713, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI222352149, Length=370, Percent_Identity=38.1081081081081, Blast_Score=227, Evalue=1e-59,
Organism=Homo sapiens, GI148613856, Length=352, Percent_Identity=37.7840909090909, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI38201710, Length=352, Percent_Identity=37.7840909090909, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI262118318, Length=354, Percent_Identity=35.3107344632768, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI262231852, Length=354, Percent_Identity=35.3107344632768, Blast_Score=220, Evalue=2e-57,
Organism=Homo sapiens, GI216548263, Length=354, Percent_Identity=35.3107344632768, Blast_Score=220, Evalue=2e-57,
Organism=Homo sapiens, GI13518015, Length=354, Percent_Identity=35.3107344632768, Blast_Score=220, Evalue=3e-57,
Organism=Homo sapiens, GI45446747, Length=351, Percent_Identity=35.6125356125356, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI45446743, Length=351, Percent_Identity=35.6125356125356, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI21071032, Length=369, Percent_Identity=33.0623306233062, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI4758138, Length=353, Percent_Identity=37.1104815864023, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI7661920, Length=370, Percent_Identity=33.7837837837838, Blast_Score=212, Evalue=4e-55,
Organism=Homo sapiens, GI224593278, Length=360, Percent_Identity=35.8333333333333, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI55749865, Length=372, Percent_Identity=34.6774193548387, Blast_Score=205, Evalue=7e-53,
Organism=Homo sapiens, GI50659095, Length=440, Percent_Identity=33.1818181818182, Blast_Score=199, Evalue=5e-51,
Organism=Homo sapiens, GI41327773, Length=352, Percent_Identity=36.0795454545455, Blast_Score=195, Evalue=5e-50,
Organism=Homo sapiens, GI164664518, Length=405, Percent_Identity=30.6172839506173, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI164419743, Length=366, Percent_Identity=33.0601092896175, Blast_Score=192, Evalue=4e-49,
Organism=Homo sapiens, GI51094101, Length=366, Percent_Identity=33.0601092896175, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI41327779, Length=381, Percent_Identity=34.9081364829396, Blast_Score=189, Evalue=5e-48,
Organism=Homo sapiens, GI20149629, Length=375, Percent_Identity=32.5333333333333, Blast_Score=189, Evalue=6e-48,
Organism=Homo sapiens, GI13129006, Length=366, Percent_Identity=33.879781420765, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI21040371, Length=366, Percent_Identity=31.9672131147541, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI4758112, Length=366, Percent_Identity=31.1475409836066, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI18375623, Length=366, Percent_Identity=31.1475409836066, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI6005743, Length=386, Percent_Identity=33.160621761658, Blast_Score=181, Evalue=1e-45,
Organism=Homo sapiens, GI8922886, Length=386, Percent_Identity=33.160621761658, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI188035877, Length=347, Percent_Identity=31.4121037463977, Blast_Score=173, Evalue=2e-43,
Organism=Homo sapiens, GI62241022, Length=365, Percent_Identity=33.4246575342466, Blast_Score=171, Evalue=9e-43,
Organism=Homo sapiens, GI83700235, Length=373, Percent_Identity=33.2439678284182, Blast_Score=171, Evalue=9e-43,
Organism=Homo sapiens, GI4503529, Length=373, Percent_Identity=32.9758713136729, Blast_Score=169, Evalue=4e-42,
Organism=Homo sapiens, GI38327634, Length=340, Percent_Identity=32.6470588235294, Blast_Score=168, Evalue=9e-42,
Organism=Homo sapiens, GI17505907, Length=475, Percent_Identity=29.4736842105263, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI31542656, Length=380, Percent_Identity=32.1052631578947, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI38569503, Length=379, Percent_Identity=29.5514511873351, Blast_Score=165, Evalue=8e-41,
Organism=Homo sapiens, GI62241024, Length=344, Percent_Identity=33.4302325581395, Blast_Score=165, Evalue=9e-41,
Organism=Homo sapiens, GI38569505, Length=379, Percent_Identity=29.5514511873351, Blast_Score=165, Evalue=1e-40,
Organism=Homo sapiens, GI164419732, Length=367, Percent_Identity=32.1525885558583, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI13514831, Length=351, Percent_Identity=30.1994301994302, Blast_Score=163, Evalue=4e-40,
Organism=Homo sapiens, GI41327776, Length=375, Percent_Identity=30.1333333333333, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI9506931, Length=403, Percent_Identity=29.2803970223325, Blast_Score=155, Evalue=5e-38,
Organism=Homo sapiens, GI256773275, Length=391, Percent_Identity=28.9002557544757, Blast_Score=146, Evalue=5e-35,
Organism=Homo sapiens, GI256223453, Length=365, Percent_Identity=29.041095890411, Blast_Score=142, Evalue=8e-34,
Organism=Homo sapiens, GI154759257, Length=414, Percent_Identity=27.536231884058, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI9966805, Length=313, Percent_Identity=29.3929712460064, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI4826686, Length=338, Percent_Identity=31.0650887573964, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI20336298, Length=249, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=1e-27,
Organism=Escherichia coli, GI1790214, Length=426, Percent_Identity=66.9014084507042, Blast_Score=593, Evalue=1e-171,
Organism=Escherichia coli, GI1787016, Length=370, Percent_Identity=39.1891891891892, Blast_Score=271, Evalue=5e-74,
Organism=Escherichia coli, GI87082221, Length=371, Percent_Identity=38.544474393531, Blast_Score=255, Evalue=5e-69,
Organism=Escherichia coli, GI1788930, Length=365, Percent_Identity=38.3561643835616, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1787605, Length=351, Percent_Identity=37.6068376068376, Blast_Score=221, Evalue=1e-58,
Organism=Caenorhabditis elegans, GI17510309, Length=363, Percent_Identity=39.9449035812672, Blast_Score=245, Evalue=4e-65,
Organism=Caenorhabditis elegans, GI71995514, Length=363, Percent_Identity=39.9449035812672, Blast_Score=244, Evalue=5e-65,
Organism=Caenorhabditis elegans, GI17510307, Length=363, Percent_Identity=39.9449035812672, Blast_Score=244, Evalue=5e-65,
Organism=Caenorhabditis elegans, GI71995718, Length=363, Percent_Identity=39.1184573002755, Blast_Score=243, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI32565321, Length=379, Percent_Identity=35.8839050131926, Blast_Score=221, Evalue=5e-58,
Organism=Caenorhabditis elegans, GI71995724, Length=370, Percent_Identity=33.2432432432432, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17507121, Length=370, Percent_Identity=33.2432432432432, Blast_Score=213, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17507877, Length=381, Percent_Identity=35.4330708661417, Blast_Score=211, Evalue=5e-55,
Organism=Caenorhabditis elegans, GI17507879, Length=381, Percent_Identity=35.9580052493438, Blast_Score=209, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI71987143, Length=375, Percent_Identity=34.9333333333333, Blast_Score=206, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI115533224, Length=438, Percent_Identity=31.7351598173516, Blast_Score=205, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI17507945, Length=338, Percent_Identity=36.094674556213, Blast_Score=204, Evalue=7e-53,
Organism=Caenorhabditis elegans, GI17552642, Length=357, Percent_Identity=35.2941176470588, Blast_Score=204, Evalue=8e-53,
Organism=Caenorhabditis elegans, GI86570094, Length=343, Percent_Identity=37.0262390670554, Blast_Score=203, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI17510559, Length=418, Percent_Identity=31.1004784688995, Blast_Score=198, Evalue=5e-51,
Organism=Caenorhabditis elegans, GI17507881, Length=374, Percent_Identity=33.9572192513369, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17555296, Length=358, Percent_Identity=32.6815642458101, Blast_Score=190, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17537549, Length=347, Percent_Identity=37.1757925072046, Blast_Score=187, Evalue=9e-48,
Organism=Caenorhabditis elegans, GI17509811, Length=383, Percent_Identity=32.6370757180157, Blast_Score=184, Evalue=7e-47,
Organism=Caenorhabditis elegans, GI115532548, Length=389, Percent_Identity=30.8483290488432, Blast_Score=181, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI115532546, Length=389, Percent_Identity=30.8483290488432, Blast_Score=181, Evalue=7e-46,
Organism=Caenorhabditis elegans, GI17552114, Length=374, Percent_Identity=31.5508021390374, Blast_Score=181, Evalue=8e-46,
Organism=Caenorhabditis elegans, GI71982858, Length=374, Percent_Identity=29.9465240641711, Blast_Score=175, Evalue=4e-44,
Organism=Caenorhabditis elegans, GI71999646, Length=381, Percent_Identity=30.4461942257218, Blast_Score=174, Evalue=9e-44,
Organism=Caenorhabditis elegans, GI71999644, Length=386, Percent_Identity=30.0518134715026, Blast_Score=174, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17536099, Length=390, Percent_Identity=32.8205128205128, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17536101, Length=390, Percent_Identity=33.0769230769231, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17505370, Length=355, Percent_Identity=33.5211267605634, Blast_Score=166, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17536103, Length=386, Percent_Identity=33.160621761658, Blast_Score=166, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI193208216, Length=374, Percent_Identity=32.620320855615, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI71990816, Length=373, Percent_Identity=33.2439678284182, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17508543, Length=388, Percent_Identity=27.319587628866, Blast_Score=156, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI17507641, Length=389, Percent_Identity=30.0771208226221, Blast_Score=152, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI32564046, Length=371, Percent_Identity=29.9191374663073, Blast_Score=147, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI193206561, Length=361, Percent_Identity=29.0858725761773, Blast_Score=143, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI25148203, Length=412, Percent_Identity=25.2427184466019, Blast_Score=130, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17556951, Length=400, Percent_Identity=28, Blast_Score=128, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI17553716, Length=369, Percent_Identity=27.9132791327913, Blast_Score=121, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI25148291, Length=330, Percent_Identity=26.6666666666667, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71997889, Length=499, Percent_Identity=25.250501002004, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71982862, Length=208, Percent_Identity=29.8076923076923, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71987152, Length=97, Percent_Identity=46.3917525773196, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17557982, Length=376, Percent_Identity=22.6063829787234, Blast_Score=83, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6325138, Length=359, Percent_Identity=39.2757660167131, Blast_Score=252, Evalue=1e-67,
Organism=Saccharomyces cerevisiae, GI6324778, Length=422, Percent_Identity=35.781990521327, Blast_Score=244, Evalue=2e-65,
Organism=Saccharomyces cerevisiae, GI6324217, Length=392, Percent_Identity=35.969387755102, Blast_Score=228, Evalue=1e-60,
Organism=Saccharomyces cerevisiae, GI6321360, Length=338, Percent_Identity=37.2781065088757, Blast_Score=218, Evalue=2e-57,
Organism=Saccharomyces cerevisiae, GI6323021, Length=361, Percent_Identity=34.0720221606648, Blast_Score=203, Evalue=5e-53,
Organism=Saccharomyces cerevisiae, GI6320041, Length=440, Percent_Identity=30.2272727272727, Blast_Score=197, Evalue=2e-51,
Organism=Saccharomyces cerevisiae, GI6321856, Length=386, Percent_Identity=34.1968911917098, Blast_Score=195, Evalue=1e-50,
Organism=Saccharomyces cerevisiae, GI6323947, Length=357, Percent_Identity=34.733893557423, Blast_Score=193, Evalue=4e-50,
Organism=Saccharomyces cerevisiae, GI6320449, Length=357, Percent_Identity=34.453781512605, Blast_Score=192, Evalue=7e-50,
Organism=Saccharomyces cerevisiae, GI6320224, Length=376, Percent_Identity=31.6489361702128, Blast_Score=190, Evalue=4e-49,
Organism=Saccharomyces cerevisiae, GI6322912, Length=373, Percent_Identity=34.0482573726542, Blast_Score=186, Evalue=9e-48,
Organism=Saccharomyces cerevisiae, GI6322323, Length=373, Percent_Identity=34.0482573726542, Blast_Score=186, Evalue=9e-48,
Organism=Saccharomyces cerevisiae, GI6324620, Length=393, Percent_Identity=32.5699745547074, Blast_Score=182, Evalue=1e-46,
Organism=Saccharomyces cerevisiae, GI6322427, Length=358, Percent_Identity=33.5195530726257, Blast_Score=177, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6321111, Length=369, Percent_Identity=30.3523035230352, Blast_Score=166, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6320119, Length=355, Percent_Identity=28.7323943661972, Blast_Score=162, Evalue=9e-41,
Organism=Saccharomyces cerevisiae, GI6321963, Length=393, Percent_Identity=31.0432569974555, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6321267, Length=425, Percent_Identity=30.5882352941176, Blast_Score=162, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6320173, Length=436, Percent_Identity=28.6697247706422, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6320400, Length=374, Percent_Identity=32.620320855615, Blast_Score=157, Evalue=4e-39,
Organism=Saccharomyces cerevisiae, GI6319714, Length=356, Percent_Identity=29.4943820224719, Blast_Score=151, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6319618, Length=422, Percent_Identity=29.8578199052133, Blast_Score=141, Evalue=2e-34,
Organism=Saccharomyces cerevisiae, GI6323306, Length=422, Percent_Identity=26.0663507109005, Blast_Score=134, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6322876, Length=404, Percent_Identity=28.7128712871287, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6324366, Length=356, Percent_Identity=27.247191011236, Blast_Score=105, Evalue=1e-23,
Organism=Drosophila melanogaster, GI17985987, Length=370, Percent_Identity=38.3783783783784, Blast_Score=244, Evalue=7e-65,
Organism=Drosophila melanogaster, GI24584399, Length=351, Percent_Identity=37.3219373219373, Blast_Score=241, Evalue=8e-64,
Organism=Drosophila melanogaster, GI21356161, Length=357, Percent_Identity=36.9747899159664, Blast_Score=225, Evalue=5e-59,
Organism=Drosophila melanogaster, GI28574962, Length=344, Percent_Identity=37.2093023255814, Blast_Score=223, Evalue=3e-58,
Organism=Drosophila melanogaster, GI24644483, Length=369, Percent_Identity=34.9593495934959, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI24644479, Length=369, Percent_Identity=34.9593495934959, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI24644487, Length=369, Percent_Identity=34.9593495934959, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI45551833, Length=369, Percent_Identity=34.9593495934959, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI24644485, Length=369, Percent_Identity=34.9593495934959, Blast_Score=219, Evalue=3e-57,
Organism=Drosophila melanogaster, GI281361218, Length=369, Percent_Identity=34.9593495934959, Blast_Score=219, Evalue=4e-57,
Organism=Drosophila melanogaster, GI24644481, Length=369, Percent_Identity=34.9593495934959, Blast_Score=219, Evalue=4e-57,
Organism=Drosophila melanogaster, GI24584994, Length=381, Percent_Identity=35.4330708661417, Blast_Score=214, Evalue=7e-56,
Organism=Drosophila melanogaster, GI24645031, Length=370, Percent_Identity=34.3243243243243, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24662330, Length=358, Percent_Identity=35.4748603351955, Blast_Score=211, Evalue=6e-55,
Organism=Drosophila melanogaster, GI21355075, Length=369, Percent_Identity=35.7723577235772, Blast_Score=210, Evalue=2e-54,
Organism=Drosophila melanogaster, GI18857967, Length=360, Percent_Identity=36.1111111111111, Blast_Score=209, Evalue=4e-54,
Organism=Drosophila melanogaster, GI17977678, Length=359, Percent_Identity=33.4261838440111, Blast_Score=208, Evalue=5e-54,
Organism=Drosophila melanogaster, GI24642151, Length=344, Percent_Identity=36.6279069767442, Blast_Score=201, Evalue=9e-52,
Organism=Drosophila melanogaster, GI28575014, Length=387, Percent_Identity=31.0077519379845, Blast_Score=190, Evalue=2e-48,
Organism=Drosophila melanogaster, GI24642822, Length=416, Percent_Identity=33.1730769230769, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24585582, Length=419, Percent_Identity=30.0715990453461, Blast_Score=185, Evalue=6e-47,
Organism=Drosophila melanogaster, GI24583281, Length=378, Percent_Identity=30.1587301587302, Blast_Score=182, Evalue=4e-46,
Organism=Drosophila melanogaster, GI24583279, Length=376, Percent_Identity=29.7872340425532, Blast_Score=182, Evalue=5e-46,
Organism=Drosophila melanogaster, GI19920478, Length=350, Percent_Identity=32.2857142857143, Blast_Score=181, Evalue=9e-46,
Organism=Drosophila melanogaster, GI24581954, Length=358, Percent_Identity=32.4022346368715, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24581952, Length=358, Percent_Identity=32.4022346368715, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24581956, Length=358, Percent_Identity=32.4022346368715, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24582080, Length=379, Percent_Identity=32.1899736147757, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24582078, Length=379, Percent_Identity=32.1899736147757, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI17136248, Length=379, Percent_Identity=32.1899736147757, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24582075, Length=379, Percent_Identity=32.1899736147757, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI24666101, Length=373, Percent_Identity=30.5630026809651, Blast_Score=174, Evalue=1e-43,
Organism=Drosophila melanogaster, GI281365720, Length=305, Percent_Identity=35.0819672131148, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI28571808, Length=344, Percent_Identity=32.8488372093023, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI28571809, Length=344, Percent_Identity=32.8488372093023, Blast_Score=173, Evalue=2e-43,
Organism=Drosophila melanogaster, GI17136814, Length=376, Percent_Identity=31.3829787234043, Blast_Score=170, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24643725, Length=410, Percent_Identity=28.5365853658537, Blast_Score=164, Evalue=1e-40,
Organism=Drosophila melanogaster, GI20130173, Length=432, Percent_Identity=30.3240740740741, Blast_Score=164, Evalue=1e-40,
Organism=Drosophila melanogaster, GI17647335, Length=359, Percent_Identity=29.2479108635098, Blast_Score=156, Evalue=3e-38,
Organism=Drosophila melanogaster, GI21355559, Length=400, Percent_Identity=31.25, Blast_Score=156, Evalue=3e-38,
Organism=Drosophila melanogaster, GI24668515, Length=327, Percent_Identity=30.8868501529052, Blast_Score=130, Evalue=3e-30,
Organism=Drosophila melanogaster, GI18859659, Length=268, Percent_Identity=32.089552238806, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI28571338, Length=268, Percent_Identity=32.089552238806, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI17136666, Length=413, Percent_Identity=26.1501210653753, Blast_Score=108, Evalue=6e-24,
Organism=Drosophila melanogaster, GI24640164, Length=353, Percent_Identity=23.7960339943343, Blast_Score=101, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 49303; Mature: 49172

Theoretical pI: Translated: 7.28; Mature: 7.28

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHCCHHHHCCCEEEECCCCCCCCCCCCCHH
MAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYG
HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHEEEEEECCEEEEEEEEC
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIR
CCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC
EDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
CCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
HHCCCCEEEEEEECHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEE
CEEYALNLPAIESYINHSIPVSNYDRDALLDDIPPPVKIHRKHPAGARNLRERSGAGRPQ
HHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCCCCC
GAHRSGGRPPRHDRTRRQP
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
CCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHCCHHHHCCCEEEECCCCCCCCCCCCCHH
MAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYG
HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHEEEEEECCEEEEEEEEC
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIR
CCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC
EDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
CCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
HHCCCCEEEEEEECHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEE
CEEYALNLPAIESYINHSIPVSNYDRDALLDDIPPPVKIHRKHPAGARNLRERSGAGRPQ
HHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCHHHHHHHCCCCCCC
GAHRSGGRPPRHDRTRRQP
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]