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The map label for this gene is ydcO [H]

Identifier: 113968669

GI number: 113968669

Start: 348672

End: 349832

Strand: Direct

Name: ydcO [H]

Synonym: Shewmr4_0325

Alternate gene names: 113968669

Gene position: 348672-349832 (Clockwise)

Preceding gene: 113968665

Following gene: 113968699

Centisome position: 7.41

GC content: 52.02

Gene sequence:

>1161_bases
ATGTGGCGCGAGGCTTTGGGACTATCAAAAATATCGGCGGGCTTTATTGCTGTGCTGGTGGGCTACAGCAGTTCGGCGGT
GATTATCCTGCAGGCGGCGGATGCCGTGGGCGCGACAGCGGCACAGATGAGTTCATGGCTGTGGGCCTTAGGTGTCGGCA
TGGGGATCACCAGTATTGGCCTGTCTCTCTACTATAAAAATCCGGTGCTTACGGCATGGTCTACCCCCGGGGCGGCGCTG
ATGGTCACCAGCCTTGCGGGATTAAGTATCAACGAAGCCGTTGGTGCCTTCCTGATTAGCTCATTGTTGATCACCCTCTG
CGGCTTGGCGGGTTGGATGGATAAGCTTATTCGTATCATGCCGCAGTCAGTCGCTTCGGCCATGTTAGCGGGGATTTTAC
TGCAGTTTGGTTTAGGACTGTTTCAAGCCATGCAGACTCAACTGAGCTTAATCCTATTGATGTTATTGGTGTTTGTTGTG
CTTAAGCCCTTTGTGCCGCGTTACATCATCTTGTTGACCTTGCTGGTAGGTATTGGCATGAGTTTTCAATTAGATTTGCT
CAAGCTAGATGCCTTTCAGTTGCAACTGGCTATGCCAGTGTGGACCATGCCTGAGTTTTCGTTGGCGAGTGTGATTGGCG
TGGCACTGCCCTTATTTGTGGTGACTATGGCCTCGCAAAATATGCCGGGCGTCGCCGCGCTGCACGGTAATGGCTACAGG
CCGCCCATTTCGCCTTTGATCACAAGTACCGGATTAGTTGGGGTAATTCTGGCGCCATTTGGCGGTTTTGCTTTTAACTT
ATCCGCCATTACAGCGGCGATTTGTATGGGTAAAGAAGCTGACCCAAATCCTGCGACCCGTTACTGGGCGGCAGTGTGGG
GCGGCGTGTTTTACTTTATCACTGGGTTACTCGGCGCTACTGTGGTTGGCCTGTTTTCCGCTTTCCCGAAGGAATTAGTT
CTGGCCATCGCCGGATTAGCACTACTCGGTACTATCGCCAATAGCCTTACCGCTGCATTAGTTAAACCCGAAGATCGTGA
AGTGGCGGTGATCACCTTCTTGATCACCGCATCAGGTTTTAGTGTGCTGGGCATCGGCAGTGCATTTTGGGGGCTGTTGG
CTGGATTTATTATCCATGCTTGGCAAACCAAAACACGCTAG

Upstream 100 bases:

>100_bases
TATAACGCACAGGTGCTATCTTGTCCATCTCGTACGTTATAGCGCACAAGTAATTAATGATGCGATGATCAAGGCGAAGG
TAGAAATAGGAGTAGGGGTG

Downstream 100 bases:

>100_bases
TGAGGGGGGGGCATTTAGCCTCAATAGACTGAAAGCTCAGATTTTGTAGGCTGCCGCCTTAGTTTGATAGGCGGTAGCGA
TTTGGCTTAATGTGAGCGTT

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATAAQMSSWLWALGVGMGITSIGLSLYYKNPVLTAWSTPGAAL
MVTSLAGLSINEAVGAFLISSLLITLCGLAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILLMLLVFVV
LKPFVPRYIILLTLLVGIGMSFQLDLLKLDAFQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLVGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALVKPEDREVAVITFLITASGFSVLGIGSAFWGLLAGFIIHAWQTKTR

Sequences:

>Translated_386_residues
MWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATAAQMSSWLWALGVGMGITSIGLSLYYKNPVLTAWSTPGAAL
MVTSLAGLSINEAVGAFLISSLLITLCGLAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILLMLLVFVV
LKPFVPRYIILLTLLVGIGMSFQLDLLKLDAFQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLVGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALVKPEDREVAVITFLITASGFSVLGIGSAFWGLLAGFIIHAWQTKTR
>Mature_386_residues
MWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATAAQMSSWLWALGVGMGITSIGLSLYYKNPVLTAWSTPGAAL
MVTSLAGLSINEAVGAFLISSLLITLCGLAGWMDKLIRIMPQSVASAMLAGILLQFGLGLFQAMQTQLSLILLMLLVFVV
LKPFVPRYIILLTLLVGIGMSFQLDLLKLDAFQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
PPISPLITSTGLVGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFITGLLGATVVGLFSAFPKELV
LAIAGLALLGTIANSLTAALVKPEDREVAVITFLITASGFSVLGIGSAFWGLLAGFIIHAWQTKTR

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=368, Percent_Identity=49.4565217391304, Blast_Score=348, Evalue=5e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40474; Mature: 40474

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS00079 MULTICOPPER_OXIDASE1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATAAQMSSWLWALGVGMGITSIG
CCCHHHCHHHHHHHHHHHHEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHH
LSLYYKNPVLTAWSTPGAALMVTSLAGLSINEAVGAFLISSLLITLCGLAGWMDKLIRIM
HEEEECCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PQSVASAMLAGILLQFGLGLFQAMQTQLSLILLMLLVFVVLKPFVPRYIILLTLLVGIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SFQLDLLKLDAFQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
CCEEHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
PPISPLITSTGLVGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFI
CCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
TGLLGATVVGLFSAFPKELVLAIAGLALLGTIANSLTAALVKPEDREVAVITFLITASGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHCCC
SVLGIGSAFWGLLAGFIIHAWQTKTR
CEEEHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATAAQMSSWLWALGVGMGITSIG
CCCHHHCHHHHHHHHHHHHEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHH
LSLYYKNPVLTAWSTPGAALMVTSLAGLSINEAVGAFLISSLLITLCGLAGWMDKLIRIM
HEEEECCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PQSVASAMLAGILLQFGLGLFQAMQTQLSLILLMLLVFVVLKPFVPRYIILLTLLVGIGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SFQLDLLKLDAFQLQLAMPVWTMPEFSLASVIGVALPLFVVTMASQNMPGVAALHGNGYR
CCEEHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
PPISPLITSTGLVGVILAPFGGFAFNLSAITAAICMGKEADPNPATRYWAAVWGGVFYFI
CCCHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
TGLLGATVVGLFSAFPKELVLAIAGLALLGTIANSLTAALVKPEDREVAVITFLITASGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHCCC
SVLGIGSAFWGLLAGFIIHAWQTKTR
CEEEHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]