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The map label for this gene is nadB [C]

Identifier: 113968643

GI number: 113968643

Start: 319808

End: 321328

Strand: Direct

Name: nadB [C]

Synonym: Shewmr4_0299

Alternate gene names: 113968643

Gene position: 319808-321328 (Clockwise)

Preceding gene: 113968639

Following gene: 113968644

Centisome position: 6.8

GC content: 47.6

Gene sequence:

>1521_bases
ATGCATGATAGAAGAAGTTTTTTAAAGCTAGGTGCTGGTGCTGCGGTAGGCGGTATCGCAGCGGCATTGCCAAGTGCAGC
ATTAGCCACTGAATGCGCCTCAAACATTAAATGGGATGAAACTCGTGATGTTATTGTCGTGGGGTCAGGTTTTGCGGGGC
TGTCATCCGCACTAAATGCTAAGCGACAAGGTCTAGGCTCGATACTGGTATTAGAAAAAATGCAGGTGATCGGTGGCAAC
TCAGCGATCAACGGGGGCTGGTTAGCTATCCCTAAAAACCCAATCCAATTAGCTCAAGGCATCAACGATGACTCACCCGA
AGAGCTAGTGAAGGATCAAATTATCTCTGGCCGCGGTATGCAAAATACCGACATGCTACGACAAATCGCTAATCGTGCCC
TGGATGCTTATCAGCTGTGTATTGATACTGGGGTTAAATTCCGTGAGGGCTTTAACCAACAAGTGGGCGGCCACAATAAA
GCGCGAGCTATCCGTACTCTGCATGGCGTCGGTGGCGATATCACCACAAAACTCTATGAAGCGGGTAAAAAAGAAGGCGT
TGAGTACCGTCTACAACATTATGTTGAAGACTTCATCATGGATGGCCAAGAGATTGTTGGCTTGAAAGTACGTCAAAATT
ATCGTTTCCCGGATCTCAAAACCGGTAAAACAATCTACATCAAAGCCAATAGGGCCGTTATCCTTGCCCACGGTGGTTTC
TCACGTAACTTAGCACTACGTGAACTGGTCGACCCTGCATTAGATAAAACCTTAGATTGTACCAATGCCCTAGGCGCAAC
GGGCGAAGTCACACTAACGGCTATGGCCCACGGTGCTTTTCCGGTTCATATGAGCTTTATTCAAACAGGTCACTGGGGCT
CGCCAGATGAAGGCGGCTTTGGCTGGTCAAATGCTCTGCTCTCGATTGGTTTCCATAAAGGGATTTCAGTCAATGTGTTA
GATGGTAAGCGTTTTATGAATGAACGCGCCGATAGAAAAACCTGCTCCGACGCCATTATGAAAAATCGTAACCCTGATGG
CTCACCCGCCTATCCTGTGGTGTTTTTTAACCATGACGATCATGTTGGTGCAGAAGAAGTGACCCGCGCAGTACGTGACC
AAATCGCTTGGAAAGTCGATAGCCTTGAGCAATTAGCTAAGCAATTCAATATCCCACTTGCGCAGCTCAAACAAACTGTA
GACGAGTACAACAAGCAAGTGCCACTGCGCATAGATCCCTTGTTTGGACGCATGATGGATACGGCAGTTGAGCTTAAAGC
GCCGTTTATTGTGTCACGTATTTGGCCAAAAGTGCACTACTGCATGGGCGGTTTAAAAACCGATTTAGGCGCGAGAGTGC
TGCATAGTCAAACCCTAGCTCCGATGAAAAATCTCTATGCCGTTGGCGAAGCAACTGGCGGCACTCACGGTGGAACCCGT
TTAAGTTCAACAGCTTGTCTGGAGTGTTTAACGATGGGAATTATCGTTGCTGAAACCATCAAATCTGACATGCAGGCCTA
A

Upstream 100 bases:

>100_bases
ACGAATAAAATTGTCACTGAAAAAAAGTCGTGACTCACTTCTCCTTAGACGCCGTTCATAACCTCTATCTTGCTTGCAAC
AGACATAGAGGGTTAACAAA

Downstream 100 bases:

>100_bases
ATCATGATGAAAACATTACTACTCACACTGGTTGTTGCAACCCTGTTCACTGGCGCAGCCAATGCCGGAGACCTTGTCAA
GATGAAAGGCAGTACCCAAG

Product: flavocytochrome c

Products: NA

Alternate protein names: Flavocytochrome c; FL cyt [H]

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MHDRRSFLKLGAGAAVGGIAAALPSAALATECASNIKWDETRDVIVVGSGFAGLSSALNAKRQGLGSILVLEKMQVIGGN
SAINGGWLAIPKNPIQLAQGINDDSPEELVKDQIISGRGMQNTDMLRQIANRALDAYQLCIDTGVKFREGFNQQVGGHNK
ARAIRTLHGVGGDITTKLYEAGKKEGVEYRLQHYVEDFIMDGQEIVGLKVRQNYRFPDLKTGKTIYIKANRAVILAHGGF
SRNLALRELVDPALDKTLDCTNALGATGEVTLTAMAHGAFPVHMSFIQTGHWGSPDEGGFGWSNALLSIGFHKGISVNVL
DGKRFMNERADRKTCSDAIMKNRNPDGSPAYPVVFFNHDDHVGAEEVTRAVRDQIAWKVDSLEQLAKQFNIPLAQLKQTV
DEYNKQVPLRIDPLFGRMMDTAVELKAPFIVSRIWPKVHYCMGGLKTDLGARVLHSQTLAPMKNLYAVGEATGGTHGGTR
LSSTACLECLTMGIIVAETIKSDMQA

Sequences:

>Translated_506_residues
MHDRRSFLKLGAGAAVGGIAAALPSAALATECASNIKWDETRDVIVVGSGFAGLSSALNAKRQGLGSILVLEKMQVIGGN
SAINGGWLAIPKNPIQLAQGINDDSPEELVKDQIISGRGMQNTDMLRQIANRALDAYQLCIDTGVKFREGFNQQVGGHNK
ARAIRTLHGVGGDITTKLYEAGKKEGVEYRLQHYVEDFIMDGQEIVGLKVRQNYRFPDLKTGKTIYIKANRAVILAHGGF
SRNLALRELVDPALDKTLDCTNALGATGEVTLTAMAHGAFPVHMSFIQTGHWGSPDEGGFGWSNALLSIGFHKGISVNVL
DGKRFMNERADRKTCSDAIMKNRNPDGSPAYPVVFFNHDDHVGAEEVTRAVRDQIAWKVDSLEQLAKQFNIPLAQLKQTV
DEYNKQVPLRIDPLFGRMMDTAVELKAPFIVSRIWPKVHYCMGGLKTDLGARVLHSQTLAPMKNLYAVGEATGGTHGGTR
LSSTACLECLTMGIIVAETIKSDMQA
>Mature_506_residues
MHDRRSFLKLGAGAAVGGIAAALPSAALATECASNIKWDETRDVIVVGSGFAGLSSALNAKRQGLGSILVLEKMQVIGGN
SAINGGWLAIPKNPIQLAQGINDDSPEELVKDQIISGRGMQNTDMLRQIANRALDAYQLCIDTGVKFREGFNQQVGGHNK
ARAIRTLHGVGGDITTKLYEAGKKEGVEYRLQHYVEDFIMDGQEIVGLKVRQNYRFPDLKTGKTIYIKANRAVILAHGGF
SRNLALRELVDPALDKTLDCTNALGATGEVTLTAMAHGAFPVHMSFIQTGHWGSPDEGGFGWSNALLSIGFHKGISVNVL
DGKRFMNERADRKTCSDAIMKNRNPDGSPAYPVVFFNHDDHVGAEEVTRAVRDQIAWKVDSLEQLAKQFNIPLAQLKQTV
DEYNKQVPLRIDPLFGRMMDTAVELKAPFIVSRIWPKVHYCMGGLKTDLGARVLHSQTLAPMKNLYAVGEATGGTHGGTR
LSSTACLECLTMGIIVAETIKSDMQA

Specific function: Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to tr

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71986328, Length=468, Percent_Identity=25.2136752136752, Blast_Score=94, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6320788, Length=502, Percent_Identity=27.0916334661355, Blast_Score=114, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6322511, Length=487, Percent_Identity=25.0513347022587, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031
- InterPro:   IPR012286 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 54925; Mature: 54925

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDRRSFLKLGAGAAVGGIAAALPSAALATECASNIKWDETRDVIVVGSGFAGLSSALNA
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
KRQGLGSILVLEKMQVIGGNSAINGGWLAIPKNPIQLAQGINDDSPEELVKDQIISGRGM
HHHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCCCCCHHHHHHHHHHCCCCC
QNTDMLRQIANRALDAYQLCIDTGVKFREGFNQQVGGHNKARAIRTLHGVGGDITTKLYE
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHCCCCHHHHHHHHHHCCCCHHHHHHHH
AGKKEGVEYRLQHYVEDFIMDGQEIVGLKVRQNYRFPDLKTGKTIYIKANRAVILAHGGF
HHHHCCHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCEEEEEECCEEEEEECCC
SRNLALRELVDPALDKTLDCTNALGATGEVTLTAMAHGAFPVHMSFIQTGHWGSPDEGGF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEHHHHHCCCCCCCCCCCC
GWSNALLSIGFHKGISVNVLDGKRFMNERADRKTCSDAIMKNRNPDGSPAYPVVFFNHDD
CHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
HVGAEEVTRAVRDQIAWKVDSLEQLAKQFNIPLAQLKQTVDEYNKQVPLRIDPLFGRMMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECHHHHHHHH
TAVELKAPFIVSRIWPKVHYCMGGLKTDLGARVLHSQTLAPMKNLYAVGEATGGTHGGTR
HHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LSSTACLECLTMGIIVAETIKSDMQA
CHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHDRRSFLKLGAGAAVGGIAAALPSAALATECASNIKWDETRDVIVVGSGFAGLSSALNA
CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
KRQGLGSILVLEKMQVIGGNSAINGGWLAIPKNPIQLAQGINDDSPEELVKDQIISGRGM
HHHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHCCCCCCCHHHHHHHHHHCCCCC
QNTDMLRQIANRALDAYQLCIDTGVKFREGFNQQVGGHNKARAIRTLHGVGGDITTKLYE
CCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHCCCCHHHHHHHHHHCCCCHHHHHHHH
AGKKEGVEYRLQHYVEDFIMDGQEIVGLKVRQNYRFPDLKTGKTIYIKANRAVILAHGGF
HHHHCCHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCCCCCCCEEEEEECCEEEEEECCC
SRNLALRELVDPALDKTLDCTNALGATGEVTLTAMAHGAFPVHMSFIQTGHWGSPDEGGF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEHHHHHCCCCCCCCCCCC
GWSNALLSIGFHKGISVNVLDGKRFMNERADRKTCSDAIMKNRNPDGSPAYPVVFFNHDD
CHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCC
HVGAEEVTRAVRDQIAWKVDSLEQLAKQFNIPLAQLKQTVDEYNKQVPLRIDPLFGRMMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECHHHHHHHH
TAVELKAPFIVSRIWPKVHYCMGGLKTDLGARVLHSQTLAPMKNLYAVGEATGGTHGGTR
HHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
LSSTACLECLTMGIIVAETIKSDMQA
CHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11425747; 12368813; 10581551 [H]