| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is yhjX [H]
Identifier: 113968403
GI number: 113968403
Start: 67822
End: 69066
Strand: Direct
Name: yhjX [H]
Synonym: Shewmr4_0058
Alternate gene names: 113968403
Gene position: 67822-69066 (Clockwise)
Preceding gene: 113968402
Following gene: 113968405
Centisome position: 1.44
GC content: 49.08
Gene sequence:
>1245_bases ATGACTAAAGAGATGAACCGTACTCGGTACCTGACCTTAGTTGGTACTATTATCACCCAGTTTGCACTCGGCTCTGTTTA CACTTGGAGCCTGTTCAATGCGCAATTGGCTGCAAAGCTCGATGAACCCGTTAGCCAAGTGGCATTTGTGTTTGGTTTAC TGAGTTTGTCTTTGGCCGTGGCTTCTTCCATGGCGGGTAAATTACAGGAACGCTTCGGCGTGCGTAATGTCACCTTAGGT GCAGGTGTGTTACTCGGGTTGGGATTCTTACTCACAGCCCAAGCCAGTAACTTGATGATGCTTTACCTGTGTGCCGGGAT TTTAGTGGGCTTTGCCGATGGCACTGGCTACTTGATGACCTTGTCTAACTGCGTGAAGTGGTTCCCCGAACGCAAAGGGC TGATTTCGGCATTAGCGATTGGTGCTTATGGTCTAGGTAGTCTCGGATTCAAGTACATCAACATGTTGTTACTCGAAAAC ACAGGCCTTGAAACTACCTTCCAACTGTGGGGCCTAATCGCCATGGCGCTAGTTTTGTGTGGCGGCATGTTGATGAAAGA TGCGCCAGCACAATCCGCCGCAAGTCAGCAAGCCGAAAGCCGCGACTTCACCCTCGCAGAAGCCATGAGTAAGCCACAAT ACTGGATGTTGGCGCTGATGTTCCTATCGGCCTGTATGAGTGGTTTATATGTGATTGGTGTGGCGAAAGATATCGGCGAG AAGATGGTCGACTTGCCCGTACTAGTCGCCGCCAATGCGGTTGCTGTCATTGCGATGGCGAACCTCTGTGGTCGCTTGGT GCTGGGTATTCTGTCGGACAAAATCCCTCGTATTCGGGTCATTTCGCTGGCGCAGATCATCACCTTAGTCGGTATGGTGT TACTGTTGTTTGTACCTTTGAATGCTAACTTGTTCTTCGTCGCGGTCGCCTGCGTTGCCTTTAGTTTTGGTGGCACTATT ACTGTTTATCCCTCATTGGTGAGTGACTTCTTCGGCCTGAATAACCTGACTAAAAATTATGGTGTTATCTACTTAGGTTT TGGTATAGGCAGCATTATAGGTTCGATTGTCGCCTCGTTATTCGGTGGCTTTATCGCGACCTTCAACGTGATTCTAGTGC TGCTGGTGGTGGCGTTAGTGATGTCATTAACCATACGTTTGCCAGAACCTAAAACTCCAGCATCAGCCAAGAAAGCGACC AAGAGCACAACCCACTTAGTGAACATGGCGACTGAATCGGCGTAA
Upstream 100 bases:
>100_bases TCATTCCTGCAGATCTGTATTTCATGCCTTAATTGATCGGCGCCAATTGCATCTCTCTTATAGTGGACTCAATTCCTGAT CCCCTAAAGCGAGATGCATC
Downstream 100 bases:
>100_bases GCACAAACACTTTGCCCTCTTAGCCAAGAGCTCAAACAAAAATCCGCAGCCAAATAGCTGCGGACTTTTAATGTCAATTG AAGTGAAAATTATAGATTTA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MTKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAVASSMAGKLQERFGVRNVTLG AGVLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMTLSNCVKWFPERKGLISALAIGAYGLGSLGFKYINMLLLEN TGLETTFQLWGLIAMALVLCGGMLMKDAPAQSAASQQAESRDFTLAEAMSKPQYWMLALMFLSACMSGLYVIGVAKDIGE KMVDLPVLVAANAVAVIAMANLCGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFVPLNANLFFVAVACVAFSFGGTI TVYPSLVSDFFGLNNLTKNYGVIYLGFGIGSIIGSIVASLFGGFIATFNVILVLLVVALVMSLTIRLPEPKTPASAKKAT KSTTHLVNMATESA
Sequences:
>Translated_414_residues MTKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAVASSMAGKLQERFGVRNVTLG AGVLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMTLSNCVKWFPERKGLISALAIGAYGLGSLGFKYINMLLLEN TGLETTFQLWGLIAMALVLCGGMLMKDAPAQSAASQQAESRDFTLAEAMSKPQYWMLALMFLSACMSGLYVIGVAKDIGE KMVDLPVLVAANAVAVIAMANLCGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFVPLNANLFFVAVACVAFSFGGTI TVYPSLVSDFFGLNNLTKNYGVIYLGFGIGSIIGSIVASLFGGFIATFNVILVLLVVALVMSLTIRLPEPKTPASAKKAT KSTTHLVNMATESA >Mature_413_residues TKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAVASSMAGKLQERFGVRNVTLGA GVLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMTLSNCVKWFPERKGLISALAIGAYGLGSLGFKYINMLLLENT GLETTFQLWGLIAMALVLCGGMLMKDAPAQSAASQQAESRDFTLAEAMSKPQYWMLALMFLSACMSGLYVIGVAKDIGEK MVDLPVLVAANAVAVIAMANLCGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFVPLNANLFFVAVACVAFSFGGTIT VYPSLVSDFFGLNNLTKNYGVIYLGFGIGSIIGSIVASLFGGFIATFNVILVLLVVALVMSLTIRLPEPKTPASAKKATK STTHLVNMATESA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42475555, Length=358, Percent_Identity=26.2569832402235, Blast_Score=76, Evalue=5e-14, Organism=Escherichia coli, GI1789969, Length=387, Percent_Identity=71.8346253229974, Blast_Score=553, Evalue=1e-159,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 43976; Mature: 43845
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAV CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASSMAGKLQERFGVRNVTLGAGVLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMT HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH LSNCVKWFPERKGLISALAIGAYGLGSLGFKYINMLLLENTGLETTFQLWGLIAMALVLC HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH GGMLMKDAPAQSAASQQAESRDFTLAEAMSKPQYWMLALMFLSACMSGLYVIGVAKDIGE CCHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEHHHHHHH KMVDLPVLVAANAVAVIAMANLCGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFVPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC NANLFFVAVACVAFSFGGTITVYPSLVSDFFGLNNLTKNYGVIYLGFGIGSIIGSIVASL CCCHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHH FGGFIATFNVILVLLVVALVMSLTIRLPEPKTPASAKKATKSTTHLVNMATESA HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TKEMNRTRYLTLVGTIITQFALGSVYTWSLFNAQLAAKLDEPVSQVAFVFGLLSLSLAV CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASSMAGKLQERFGVRNVTLGAGVLLGLGFLLTAQASNLMMLYLCAGILVGFADGTGYLMT HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH LSNCVKWFPERKGLISALAIGAYGLGSLGFKYINMLLLENTGLETTFQLWGLIAMALVLC HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH GGMLMKDAPAQSAASQQAESRDFTLAEAMSKPQYWMLALMFLSACMSGLYVIGVAKDIGE CCHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEHHHHHHH KMVDLPVLVAANAVAVIAMANLCGRLVLGILSDKIPRIRVISLAQIITLVGMVLLLFVPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC NANLFFVAVACVAFSFGGTITVYPSLVSDFFGLNNLTKNYGVIYLGFGIGSIIGSIVASL CCCHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHH FGGFIATFNVILVLLVVALVMSLTIRLPEPKTPASAKKATKSTTHLVNMATESA HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]