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The map label for this gene is ypdA [H]

Identifier: 113968401

GI number: 113968401

Start: 65316

End: 66989

Strand: Direct

Name: ypdA [H]

Synonym: Shewmr4_0056

Alternate gene names: 113968401

Gene position: 65316-66989 (Clockwise)

Preceding gene: 113968395

Following gene: 113968402

Centisome position: 1.39

GC content: 48.63

Gene sequence:

>1674_bases
GTGCTCGAAAATCAAATGATGTTACTGGCGGTATTTGAACGGGCAGCCTTGATGCTGATGACCCTGTTCTTTTTAACCCG
CACTCGACCGTTCCAGCGTTTATTCCAAAAGCGTAATCACACCCCCGCAGAGCTGGTCTCTGTGGCGGCGATATTTTGCT
TATTTGCGGTGTTCAGTACTTATACTGGCATTGAGGTTGAAGGTGCGCTGGTTAACGTGCGGATTATCGCGATTATTTCC
GGCGGGATTCTATTTGGCCCTTGGGTTGGTATTCCTGCAGGCGTGCTGTCGGGGCTACATAGATATCTGATTGATATGGA
TGGCGATACTTCTATCCCGTGTCTAATCGCCAGCATTATTGCCGGTCTAATGGCGACCTGGATTTACTATAAATGTCCCA
AATCTAAGTTGTGGATTTATGGCATTGCGGCGGGCATGTTGTGCGAAACACTGACCATGTTGTTGATTTGGCTGCTGACA
GAGCCACACGAGGTAGGCGTTGAGATAGTGAGTCACATTGCCTATCCCATGATCGCAGGCACTGTGTGTATTGGACTTAT
CATCAAGCTAGTGCAAGACCTCGACGATGAAAAAGAACTGATTGCCGCTAAGCAGGCCAAGCTCGCGCTGGATATTGCCA
ACAAAACCTTACCTTTCTTCCGCAAAATTGATCGCCAAGCCTTAGAGCAAGTGTGCGCCGTGATCCGTAATGAAATCCAT
GCCGATGCCGTGGCGATTACCGATACTCGCGATGTATTAGCCTATATGGGCGTTGGTAAAGATTACTACGAGGTTGATGG
TCATCAGGCCATTAGTGAAATGACGCAAAGGGCGATAGAGCTAGATCAAAACATTATTAACAACGACTTACGCCAATATC
ATTTATCTGATTTTCATTCGGTCATCATAATTCCGCTGCGCGAAAACGGCACGGTAAGCGGTACGCTGAAGATTTATTAT
CGCAATAACTACCGGATTACCAGCTCGCTGCGGGAGATGGCGGTGGGCTTGTCGCAGTTGATTTCGACCCAGATTGAGGT
GTCGCGCATCGAGCAACTGCAAGAGATGACCCGTAAGGCGGAGTTCACTGCACTGCAGAGCAAGATTAACCCACACTTTT
TGTTTAATGCCCTCAATGCGATTTCTTCTTTGATCCGCATTCGACCACAGCAGGCGCGGGAGTTGATTGCCAATCTGGCC
GATTATCTGCGTTATAACTTAGACAAAGGCGATGAGCTGATTGATATCCAAGAAGAAGTTAAACAAGTACGCGATTATGT
GGCGATAGAGCAGGCGCGCTATGGCGACAAGCTTGAAGTGGTATTCGATGTCGACGATGTGCATTTTTGTGTGCCTTGTC
TCCTGTTACAGCCGCTGGTGGAAAACGCCATTTTGCACGGCATTCAGCCGCGTAGTGCGCCGGGCAGAGTGACCATAGAG
GTGAAAAAACTCGATGCTGGCATTCGGGTGGCCGTGCGTGATACGGGTTATGGCATTAGCCAAGAGGTAATTGATGGTGT
CGCCGCCGGTCGTATCGAGAGCAGCAGTATTGGACTGACGAATGTGCACCAGAGGGTGAAGTTATTGTACGGTGAAGGGC
TACAGCTTAAACGGCTAAATCCGGGGACCGAAGTTAGCTTTTATTTACCAGAAAATGAGGCGCAAGTATGTTAA

Upstream 100 bases:

>100_bases
CCTAAACCTTAATCCATTCAGCGTACCGTTTAACACTAACACAGATAGAATTCACATGTAGAATTAGGTCGTCACTCAGC
GCGATGGCTTAGGGGGAAGC

Downstream 100 bases:

>100_bases
AAGCCATCATAGTTGAAGATGAATATCTGGCCCGTGAGGAGCTGGAGTATTTAGTAAAGAGCCACAGTGAGATAGACATA
GTGGCAAGCTTTGAGGATGG

Product: signal transduction histidine kinase, LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFSTYTGIEVEGALVNVRIIAIIS
GGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASIIAGLMATWIYYKCPKSKLWIYGIAAGMLCETLTMLLIWLLT
EPHEVGVEIVSHIAYPMIAGTVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRQALEQVCAVIRNEIH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHSVIIIPLRENGTVSGTLKIYY
RNNYRITSSLREMAVGLSQLISTQIEVSRIEQLQEMTRKAEFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLA
DYLRYNLDKGDELIDIQEEVKQVRDYVAIEQARYGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLTNVHQRVKLLYGEGLQLKRLNPGTEVSFYLPENEAQVC

Sequences:

>Translated_557_residues
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFSTYTGIEVEGALVNVRIIAIIS
GGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASIIAGLMATWIYYKCPKSKLWIYGIAAGMLCETLTMLLIWLLT
EPHEVGVEIVSHIAYPMIAGTVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRQALEQVCAVIRNEIH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHSVIIIPLRENGTVSGTLKIYY
RNNYRITSSLREMAVGLSQLISTQIEVSRIEQLQEMTRKAEFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLA
DYLRYNLDKGDELIDIQEEVKQVRDYVAIEQARYGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLTNVHQRVKLLYGEGLQLKRLNPGTEVSFYLPENEAQVC
>Mature_557_residues
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFSTYTGIEVEGALVNVRIIAIIS
GGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASIIAGLMATWIYYKCPKSKLWIYGIAAGMLCETLTMLLIWLLT
EPHEVGVEIVSHIAYPMIAGTVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRQALEQVCAVIRNEIH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHSVIIIPLRENGTVSGTLKIYY
RNNYRITSSLREMAVGLSQLISTQIEVSRIEQLQEMTRKAEFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLA
DYLRYNLDKGDELIDIQEEVKQVRDYVAIEQARYGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLTNVHQRVKLLYGEGLQLKRLNPGTEVSFYLPENEAQVC

Specific function: Unknown

COG id: COG3275

COG function: function code T; Putative regulator of cell autolysis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=552, Percent_Identity=59.4202898550725, Blast_Score=667, Evalue=0.0,
Organism=Escherichia coli, GI1788446, Length=543, Percent_Identity=29.6500920810313, Blast_Score=210, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: 2.7.3.-

Molecular weight: Translated: 62379; Mature: 62379

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFST
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YTGIEVEGALVNVRIIAIISGGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASII
CCCCEEECEEEEEEEEEEEECCCEECCCCCCHHHHHHHHHHHHEECCCCCCHHHHHHHHH
AGLMATWIYYKCPKSKLWIYGIAAGMLCETLTMLLIWLLTEPHEVGVEIVSHIAYPMIAG
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRQALEQVCAVIRNEIH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHS
CCEEEEECHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VIIIPLRENGTVSGTLKIYYRNNYRITSSLREMAVGLSQLISTQIEVSRIEQLQEMTRKA
EEEEEEECCCCEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLADYLRYNLDKGDELIDIQEEV
HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH
KQVRDYVAIEQARYGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLTNVHQRVKLLYGEGLQLKRLN
EEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECC
PGTEVSFYLPENEAQVC
CCCEEEEEECCCCCCCC
>Mature Secondary Structure
MLENQMMLLAVFERAALMLMTLFFLTRTRPFQRLFQKRNHTPAELVSVAAIFCLFAVFST
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YTGIEVEGALVNVRIIAIISGGILFGPWVGIPAGVLSGLHRYLIDMDGDTSIPCLIASII
CCCCEEECEEEEEEEEEEEECCCEECCCCCCHHHHHHHHHHHHEECCCCCCHHHHHHHHH
AGLMATWIYYKCPKSKLWIYGIAAGMLCETLTMLLIWLLTEPHEVGVEIVSHIAYPMIAG
HHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TVCIGLIIKLVQDLDDEKELIAAKQAKLALDIANKTLPFFRKIDRQALEQVCAVIRNEIH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ADAVAITDTRDVLAYMGVGKDYYEVDGHQAISEMTQRAIELDQNIINNDLRQYHLSDFHS
CCEEEEECHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
VIIIPLRENGTVSGTLKIYYRNNYRITSSLREMAVGLSQLISTQIEVSRIEQLQEMTRKA
EEEEEEECCCCEEEEEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFTALQSKINPHFLFNALNAISSLIRIRPQQARELIANLADYLRYNLDKGDELIDIQEEV
HHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH
KQVRDYVAIEQARYGDKLEVVFDVDDVHFCVPCLLLQPLVENAILHGIQPRSAPGRVTIE
HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
VKKLDAGIRVAVRDTGYGISQEVIDGVAAGRIESSSIGLTNVHQRVKLLYGEGLQLKRLN
EEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEECC
PGTEVSFYLPENEAQVC
CCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]