| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is icfG [H]
Identifier: 113478338
GI number: 113478338
Start: 7663626
End: 7665005
Strand: Reverse
Name: icfG [H]
Synonym: Tery_5014
Alternate gene names: 113478338
Gene position: 7665005-7663626 (Counterclockwise)
Preceding gene: 113478339
Following gene: 113478337
Centisome position: 98.9
GC content: 38.19
Gene sequence:
>1380_bases ATGGAATCTATAGAAGAAAACCTTAGAAAAGAACTAGATGGGTTGCGACAGGAAATGGCCAAAGTAGAAGAAGAACTAGC AGCCTTCCGACTAGCCCAAAAGGTATTAACAGAAGTAACAACAGGATGCAACTCTAACCCAGGAGGGATTATTAGAGCAG CTTTACAAAAAACTTTAGATGTTTGTGCTGATGTAACTGCAACTGAGAAGGGAAGTTTATTTTTACTAGATCCTACATCT AAGAAAGTAGTAGACGCTATTCTTACTCGCACTGAAGTAACCTCAGAACAACGGGCTAAATTGATAGGTAATGTTAGAGA CAAAGGGCTTGCAGGTTGGGTAAGTCGTCATCGTGAGATAGGATTAATTACAGATACAGAAGATGATGATCGTTGGTTAA CTTTACCTAATCAACCTTACATCGTTCGTTCAGCATTGGGGGTTCCAATTATCAATGGTCAAGATTTGCTTGGTATTATT ACTTTATTGCACTCTGAACCTAATCATTTTACTAAGAGAATGGCAGAGTCAATGGAGGCAACTGCAGAACACATAGGGTT AGTTCTAGAAAATGCCAGACTTTATGGGCAACTAGATACTTATTCCAAAGCTCTTGACAATGAATTAGAAAAGGGTAGAC AAATTCAGATAGATTTTCTTCCCTACGATATCCCTCAGTTGGATAATTGGGAAATAGTTGCCTGTTTTCATCCAGCAAAG CAAGTAGCCGGAGATTTTTACGATGCTTTTACCCTGCCCAAGGATCAAATAGGGTTGGTTATAGCAGATGTTTGTGATAA GGGAGTCGGTGCAGCATTGTTTATGGCTTTATTTCGCAGCTTAATTCGTATCTTTTCTGTTGGGGAAAGTAAATTACAAG AAACTGCAACTTCAGTTAATTTAATTCACCAGAATGCTCTTCAAGCTGTTCGCCTTACTAATGACTACGTTGTGCAAAAC CATTGGCAAATGAGTATGTTTGCTACATTATTTTTTGGGGTGCTAGATCCAGAGACAGGTTTAGTTAGTTATGTGAATGG AGGACATGAACCACTTTTTATTATTAATCAAGATGGTATCATAAGGCAAATACTAAATTCTACTGGACCTGCTGTAGGGA TGATGCCAAATATGAAGTTTGAAATTCAGGAAGTTAAGTTAGAGCCTGGAGAAATGCTCATAGGTTATACTGATGGCGTG ACTGAAGCTAAATGTCCTGAAGGAAAGTTATTTACAGACAAAAGGCTGAAAGAATTGGTGGAAAAACCGGCTAATTCTGC ATTAGAATTGATGAGTCGCATTAAAGAGAAATTATTTGATTATATAGCAGATGCAGCACAATTTGATGACATTACGGTGT TAGCTGTGCGAAGAAGTTAG
Upstream 100 bases:
>100_bases TTGATATTATAAATCAAAAAGGTAGGGCTAGGTTGCAATTATTTCCTAGTCATCAGTGCCTAGCCTCTATATTATTAATA GGTTAAGGGTATTATCAACA
Downstream 100 bases:
>100_bases ATCAAGCTATTAGTAAAAAGATCAAAAACAGGAGAATTTATGGAGGCATTAAAAGTACAAGGAAAGCTAGATAGTCTAGG AAAAATTCGCGAATATGTTA
Product: serine phosphatase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MESIEENLRKELDGLRQEMAKVEEELAAFRLAQKVLTEVTTGCNSNPGGIIRAALQKTLDVCADVTATEKGSLFLLDPTS KKVVDAILTRTEVTSEQRAKLIGNVRDKGLAGWVSRHREIGLITDTEDDDRWLTLPNQPYIVRSALGVPIINGQDLLGII TLLHSEPNHFTKRMAESMEATAEHIGLVLENARLYGQLDTYSKALDNELEKGRQIQIDFLPYDIPQLDNWEIVACFHPAK QVAGDFYDAFTLPKDQIGLVIADVCDKGVGAALFMALFRSLIRIFSVGESKLQETATSVNLIHQNALQAVRLTNDYVVQN HWQMSMFATLFFGVLDPETGLVSYVNGGHEPLFIINQDGIIRQILNSTGPAVGMMPNMKFEIQEVKLEPGEMLIGYTDGV TEAKCPEGKLFTDKRLKELVEKPANSALELMSRIKEKLFDYIADAAQFDDITVLAVRRS
Sequences:
>Translated_459_residues MESIEENLRKELDGLRQEMAKVEEELAAFRLAQKVLTEVTTGCNSNPGGIIRAALQKTLDVCADVTATEKGSLFLLDPTS KKVVDAILTRTEVTSEQRAKLIGNVRDKGLAGWVSRHREIGLITDTEDDDRWLTLPNQPYIVRSALGVPIINGQDLLGII TLLHSEPNHFTKRMAESMEATAEHIGLVLENARLYGQLDTYSKALDNELEKGRQIQIDFLPYDIPQLDNWEIVACFHPAK QVAGDFYDAFTLPKDQIGLVIADVCDKGVGAALFMALFRSLIRIFSVGESKLQETATSVNLIHQNALQAVRLTNDYVVQN HWQMSMFATLFFGVLDPETGLVSYVNGGHEPLFIINQDGIIRQILNSTGPAVGMMPNMKFEIQEVKLEPGEMLIGYTDGV TEAKCPEGKLFTDKRLKELVEKPANSALELMSRIKEKLFDYIADAAQFDDITVLAVRRS >Mature_459_residues MESIEENLRKELDGLRQEMAKVEEELAAFRLAQKVLTEVTTGCNSNPGGIIRAALQKTLDVCADVTATEKGSLFLLDPTS KKVVDAILTRTEVTSEQRAKLIGNVRDKGLAGWVSRHREIGLITDTEDDDRWLTLPNQPYIVRSALGVPIINGQDLLGII TLLHSEPNHFTKRMAESMEATAEHIGLVLENARLYGQLDTYSKALDNELEKGRQIQIDFLPYDIPQLDNWEIVACFHPAK QVAGDFYDAFTLPKDQIGLVIADVCDKGVGAALFMALFRSLIRIFSVGESKLQETATSVNLIHQNALQAVRLTNDYVVQN HWQMSMFATLFFGVLDPETGLVSYVNGGHEPLFIINQDGIIRQILNSTGPAVGMMPNMKFEIQEVKLEPGEMLIGYTDGV TEAKCPEGKLFTDKRLKELVEKPANSALELMSRIKEKLFDYIADAAQFDDITVLAVRRS
Specific function: Involved in cross-regulation of inorganic carbon and glucose metabolisms [H]
COG id: COG2208
COG function: function code TK; Serine phosphatase RsbU, regulator of sigma subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PP2C-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003660 - InterPro: IPR001932 - InterPro: IPR010822 [H]
Pfam domain/function: PF00672 HAMP; PF07228 SpoIIE [H]
EC number: NA
Molecular weight: Translated: 51081; Mature: 51081
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESIEENLRKELDGLRQEMAKVEEELAAFRLAQKVLTEVTTGCNSNPGGIIRAALQKTLD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH VCADVTATEKGSLFLLDPTSKKVVDAILTRTEVTSEQRAKLIGNVRDKGLAGWVSRHREI HHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEE GLITDTEDDDRWLTLPNQPYIVRSALGVPIINGQDLLGIITLLHSEPNHFTKRMAESMEA EEEECCCCCCCEEECCCCCEEEEHHCCCCEECCCHHHHHHHHHHCCCHHHHHHHHHHHHH TAEHIGLVLENARLYGQLDTYSKALDNELEKGRQIQIDFLPYDIPQLDNWEIVACFHPAK HHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCHH QVAGDFYDAFTLPKDQIGLVIADVCDKGVGAALFMALFRSLIRIFSVGESKLQETATSVN HHHHHHHHHHCCCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LIHQNALQAVRLTNDYVVQNHWQMSMFATLFFGVLDPETGLVSYVNGGHEPLFIINQDGI HHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCCEEHEECCCCCEEEEECCCHH IRQILNSTGPAVGMMPNMKFEIQEVKLEPGEMLIGYTDGVTEAKCPEGKLFTDKRLKELV HHHHHHCCCCCEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH EKPANSALELMSRIKEKLFDYIADAAQFDDITVLAVRRS HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC >Mature Secondary Structure MESIEENLRKELDGLRQEMAKVEEELAAFRLAQKVLTEVTTGCNSNPGGIIRAALQKTLD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH VCADVTATEKGSLFLLDPTSKKVVDAILTRTEVTSEQRAKLIGNVRDKGLAGWVSRHREI HHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEE GLITDTEDDDRWLTLPNQPYIVRSALGVPIINGQDLLGIITLLHSEPNHFTKRMAESMEA EEEECCCCCCCEEECCCCCEEEEHHCCCCEECCCHHHHHHHHHHCCCHHHHHHHHHHHHH TAEHIGLVLENARLYGQLDTYSKALDNELEKGRQIQIDFLPYDIPQLDNWEIVACFHPAK HHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCHH QVAGDFYDAFTLPKDQIGLVIADVCDKGVGAALFMALFRSLIRIFSVGESKLQETATSVN HHHHHHHHHHCCCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH LIHQNALQAVRLTNDYVVQNHWQMSMFATLFFGVLDPETGLVSYVNGGHEPLFIINQDGI HHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCCEEHEECCCCCEEEEECCCHH IRQILNSTGPAVGMMPNMKFEIQEVKLEPGEMLIGYTDGVTEAKCPEGKLFTDKRLKELV HHHHHHCCCCCEECCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH EKPANSALELMSRIKEKLFDYIADAAQFDDITVLAVRRS HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8075401; 8905231 [H]