Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113478304

Identifier: 113478304

GI number: 113478304

Start: 7602384

End: 7603871

Strand: Reverse

Name: 113478304

Synonym: Tery_4978

Alternate gene names: NA

Gene position: 7603871-7602384 (Counterclockwise)

Preceding gene: 113478305

Following gene: 113478303

Centisome position: 98.11

GC content: 33.87

Gene sequence:

>1488_bases
TTGATACCAAAAACCTTTAGATACTGGATTATATCTTTGCTATTAAGCTTAATTATCTGCCTAGGTATATCAAGTCCTAG
CTACGCCTATAGTCAATCTATTACTACCAAAACAATCCATGTTTTAAATCGTCTGACTTTGGGCCCTAGGCCAGGAGATA
TAGAACGAGTTGAGTCTATAGGAATTGATAATTATATTAAATCTCAACTGAGACCAGAAACTATTAGAGAATCTCCTCAA
CTTACACAAAAAATGGCTAAGTTAACCAATTTCTACTTATCACCAACAGAATTATATCAAAAAACTGTCTCTCCAGTTAA
AAAAAGAGATAAAAATTTGACTCAAAAACAACGAATAGAAATAAGAAATAAAAATATCAGAAAAATTTTACGGGAATCAG
AAAATGCACGTTTACTTCAAGGAATATTGAGCAACAAACAACTACAAGAAGTAATGGTAGATTTTTGGTTTAACCACTTC
AATATTTCTGTAGGTAAAGGTTACTTAACTCGCCTCTGGGTAGGGACTTACGAAAGAGACGCTATTCGACCTTATGCACT
TGGTAATTTTCGTAATTTATTAGGAGCAACAGCCCATCATCCAGCAATGCTATTTTATTTAGATAATTGGCTAAATACTG
CCCCTGGTAGTAAAGGTGCCCGTGGCAAATTTAAAGGCTTAAATGAAAACTATGCCCGTGAGCTTATGGAGCTTCATAGT
ATGGGAATTAATGGAGGTTATACACAACAAGAGATAATAACTTTAGCAAGAATTTTTACAGGTTGGGGAATAAAGTACCT
TAGTGAAGATGGTAGTGGGTTTAAGTTTTATCAAAATCGCCATGATAATAGTGACAAAATATTCCTAGGAGTACCCATTA
AAGGTGGTGGAGTAGAAGAGGGAGAAAAGGCTTTAGATATTTTAGCAAAACATCCATCTACTGCCCATTTTATTAGTTAT
AAATTAGCTCAATATTTTGTTGCCGATGTACCTCCCAGTAGCTTAGTTAATAAACTAGATCAAAGATTTCAAGAAACTAA
TGGCAATATTCGTTATGTATTAGAAACCTTATTTAATAGTTCTGAGTTTTGGAATGAAAAATATTATGATAGTAAGTTTA
AAAACCCTTATCAATATATTATTTCTGCTGCTAGATCAACGGGTACCGAAAACCCAAGATTCGGCAGAATTAAAAGAATT
TTAGGTCAATTAGGAATGAACCTTTATGGCTGTAAGACTCCTGACGGCTATAAAAACACTCAAGAAGCATGGTTAAATCC
TGATGCTATAATGCGTCGGATTAGTTTTGCTACAATTATATCCCGTGGTCAGTTGAATCAAGGAAAGCCTAAACTGGTAA
ATTATCAGCAACTTAGGGCAACTTTAGGAAATAGATTTTCTACCCAAACTCAAGCCGTTATTAACAATAGTCCAGATAAT
TTACAGGCAGCATTAATTTTAGGTAGTCCAGAAATGATGAAAAAATAA

Upstream 100 bases:

>100_bases
GTTGACTAAAAGCAAAAAAAATTAGAATTAAAACTGCTATAAAATATATAAAAGTTAAATAATACAAGTCAAAAAAATTA
GAGTATTTCAGGAGGAATAG

Downstream 100 bases:

>100_bases
ATTAAAAGTTATGGTCAATTTTTCTACTGATTAATCTGTCATTTTAGTTATCAGTTATTAGTTATCAATACCTATGACTG
AAGATATAGCTTGAAATAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESIGIDNYIKSQLRPETIRESPQ
LTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIEIRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHF
NISVGKGYLTRLWVGTYERDAIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS
MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEEGEKALDILAKHPSTAHFISY
KLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNSSEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRI
LGQLGMNLYGCKTPDGYKNTQEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN
LQAALILGSPEMMKK

Sequences:

>Translated_495_residues
MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESIGIDNYIKSQLRPETIRESPQ
LTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIEIRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHF
NISVGKGYLTRLWVGTYERDAIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS
MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEEGEKALDILAKHPSTAHFISY
KLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNSSEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRI
LGQLGMNLYGCKTPDGYKNTQEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN
LQAALILGSPEMMKK
>Mature_495_residues
MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESIGIDNYIKSQLRPETIRESPQ
LTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIEIRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHF
NISVGKGYLTRLWVGTYERDAIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS
MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEEGEKALDILAKHPSTAHFISY
KLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNSSEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRI
LGQLGMNLYGCKTPDGYKNTQEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN
LQAALILGSPEMMKK

Specific function: Unknown

COG id: COG5267

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56539; Mature: 56539

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHC
GIDNYIKSQLRPETIRESPQLTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIE
CHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
IRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHFNISVGKGYLTRLWVGTYERD
HHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCHHHHHEECCCCCC
AIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS
CCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEE
CCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCC
GEKALDILAKHPSTAHFISYKLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
SEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRILGQLGMNLYGCKTPDGYKNT
HHHHCHHHCCHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCC
QEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN
HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCC
LQAALILGSPEMMKK
EEEEEEECCHHHHCC
>Mature Secondary Structure
MIPKTFRYWIISLLLSLIICLGISSPSYAYSQSITTKTIHVLNRLTLGPRPGDIERVESI
CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHC
GIDNYIKSQLRPETIRESPQLTQKMAKLTNFYLSPTELYQKTVSPVKKRDKNLTQKQRIE
CHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
IRNKNIRKILRESENARLLQGILSNKQLQEVMVDFWFNHFNISVGKGYLTRLWVGTYERD
HHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCHHHHHEECCCCCC
AIRPYALGNFRNLLGATAHHPAMLFYLDNWLNTAPGSKGARGKFKGLNENYARELMELHS
CCCCHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
MGINGGYTQQEIITLARIFTGWGIKYLSEDGSGFKFYQNRHDNSDKIFLGVPIKGGGVEE
CCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCC
GEKALDILAKHPSTAHFISYKLAQYFVADVPPSSLVNKLDQRFQETNGNIRYVLETLFNS
HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
SEFWNEKYYDSKFKNPYQYIISAARSTGTENPRFGRIKRILGQLGMNLYGCKTPDGYKNT
HHHHCHHHCCHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCCC
QEAWLNPDAIMRRISFATIISRGQLNQGKPKLVNYQQLRATLGNRFSTQTQAVINNSPDN
HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCC
LQAALILGSPEMMKK
EEEEEEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA