| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478266
Identifier: 113478266
GI number: 113478266
Start: 7528183
End: 7528671
Strand: Reverse
Name: 113478266
Synonym: Tery_4939
Alternate gene names: NA
Gene position: 7528671-7528183 (Counterclockwise)
Preceding gene: 113478268
Following gene: 113478264
Centisome position: 97.14
GC content: 36.2
Gene sequence:
>489_bases ATGTTAACCTATCAACGCAAACCTATAAGTCTATCACTGATATCAACAGACTTACCAATTTGGTCTATAGTTAAAACTTC AGCTACTCTTTATCACAAAGACCGGGATAAATTCCATATATTATTGCATGAACCTGCAATTACGGATACAAAAGTATCAT ATACAGACGAATTACCAATATTGCCAACTGCTGCTAAACCCAGACTTTTGTGGTTAGAAGTTTCTCTGTCTAGAATTATT ATGACTATGCAAGGAAACGGTAAATATAGTTACCGCCATGTTTGGCAAACAGGAGTATACGGCATCTGTCGTTATTGGCT TCAAGATGATTCATTAAATTTACATCATCAGTTGCAACTACGTAACTTTACCCGTAACTTACAAGTTCTGGGTAAACCAA TTCCTGATTATTTGCGCCTAGAATATGAACTATGGTCTCAACAGTTACGGATGGGACATTATGTACTAGAGCTGGAAATT CATCAATAG
Upstream 100 bases:
>100_bases TTTTGTCAGTTTATTAACAAGCATATTACCTGATGTATCTGGAAAAATTGCAAACAAAATAACAACTATATAAACCAAGA ACTACAATCTGAGAACATAT
Downstream 100 bases:
>100_bases AGTTGTTGGGAAATAGGGTAAAATGATTCAAAAATGAATTGACTAGAAAAATGCTAAATTAGAAAAGTGCTAAATATAGA ACGAGTCTTAAAACAAGATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 162; Mature: 162
Protein sequence:
>162_residues MLTYQRKPISLSLISTDLPIWSIVKTSATLYHKDRDKFHILLHEPAITDTKVSYTDELPILPTAAKPRLLWLEVSLSRII MTMQGNGKYSYRHVWQTGVYGICRYWLQDDSLNLHHQLQLRNFTRNLQVLGKPIPDYLRLEYELWSQQLRMGHYVLELEI HQ
Sequences:
>Translated_162_residues MLTYQRKPISLSLISTDLPIWSIVKTSATLYHKDRDKFHILLHEPAITDTKVSYTDELPILPTAAKPRLLWLEVSLSRII MTMQGNGKYSYRHVWQTGVYGICRYWLQDDSLNLHHQLQLRNFTRNLQVLGKPIPDYLRLEYELWSQQLRMGHYVLELEI HQ >Mature_162_residues MLTYQRKPISLSLISTDLPIWSIVKTSATLYHKDRDKFHILLHEPAITDTKVSYTDELPILPTAAKPRLLWLEVSLSRII MTMQGNGKYSYRHVWQTGVYGICRYWLQDDSLNLHHQLQLRNFTRNLQVLGKPIPDYLRLEYELWSQQLRMGHYVLELEI HQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19218; Mature: 19218
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTYQRKPISLSLISTDLPIWSIVKTSATLYHKDRDKFHILLHEPAITDTKVSYTDELPI CCCCCCCCEEEEEEECCCCEEEHHHCCEEEEECCCCEEEEEEECCCCCCCEEEECCCCCC LPTAAKPRLLWLEVSLSRIIMTMQGNGKYSYRHVWQTGVYGICRYWLQDDSLNLHHQLQL CCCCCCCEEEEEEEEECEEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEEE RNFTRNLQVLGKPIPDYLRLEYELWSQQLRMGHYVLELEIHQ HHHHCCCEEECCCCCHHHEEEHHHHHHHHCCCEEEEEEEEEC >Mature Secondary Structure MLTYQRKPISLSLISTDLPIWSIVKTSATLYHKDRDKFHILLHEPAITDTKVSYTDELPI CCCCCCCCEEEEEEECCCCEEEHHHCCEEEEECCCCEEEEEEECCCCCCCEEEECCCCCC LPTAAKPRLLWLEVSLSRIIMTMQGNGKYSYRHVWQTGVYGICRYWLQDDSLNLHHQLQL CCCCCCCEEEEEEEEECEEEEEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEEE RNFTRNLQVLGKPIPDYLRLEYELWSQQLRMGHYVLELEIHQ HHHHCCCEEECCCCCHHHEEEHHHHHHHHCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA