Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113478218

Identifier: 113478218

GI number: 113478218

Start: 7461541

End: 7461945

Strand: Reverse

Name: 113478218

Synonym: Tery_4876

Alternate gene names: NA

Gene position: 7461945-7461541 (Counterclockwise)

Preceding gene: 113478219

Following gene: 113478216

Centisome position: 96.28

GC content: 36.79

Gene sequence:

>405_bases
ATGCTAAAATTAACTTATACTGAATCTGACTTTTATATCAAGCGTTTGGCTCAATCTCCCAAACAGTTAGTAGCACTACG
GGTAATGTTAGCTATGGGAGTTGGTAAAAAAATTGTAGTTGAACCAAGTTCTGTTGCTTTTTTACTGCCTATAAGTTTAC
CTGAGTTGTCGATGTTGGAGCTAGCTATAGAAAAGGAGGAGGGGGAATATATTGATCTTTGTGTTGCTGATGATGAATTT
GTGGAAGTTACTTTAGTAGGAACTTGGGTTACTACTCTAGATCCAAAACAAGAAAATGGAATTTTTATAACTGCTTTGAG
CGATCAGATTGAGTTGTTACTTTTGAACTTGTGGCAAGCAACTAAGGCGGATGCGTCAGTAAGTCAGAAAGGAAATGATT
GGTAA

Upstream 100 bases:

>100_bases
TAATTTCAATGACTGCGAAGAGTTTTGAGTTTTGAGTTATAGATTAATAACTCAATAACATCGGAAGCTCTTCACATTAA
CAAAGGAGAGACCACCGGGA

Downstream 100 bases:

>100_bases
AATTGTAGGTAGTCCTATATATGTAGTGATATGTTCATATAAGCAGTCAGTAATGGATATTAATATCAGAAATATTGCGC
TTTTGCCTACTAAAAATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MLKLTYTESDFYIKRLAQSPKQLVALRVMLAMGVGKKIVVEPSSVAFLLPISLPELSMLELAIEKEEGEYIDLCVADDEF
VEVTLVGTWVTTLDPKQENGIFITALSDQIELLLLNLWQATKADASVSQKGNDW

Sequences:

>Translated_134_residues
MLKLTYTESDFYIKRLAQSPKQLVALRVMLAMGVGKKIVVEPSSVAFLLPISLPELSMLELAIEKEEGEYIDLCVADDEF
VEVTLVGTWVTTLDPKQENGIFITALSDQIELLLLNLWQATKADASVSQKGNDW
>Mature_134_residues
MLKLTYTESDFYIKRLAQSPKQLVALRVMLAMGVGKKIVVEPSSVAFLLPISLPELSMLELAIEKEEGEYIDLCVADDEF
VEVTLVGTWVTTLDPKQENGIFITALSDQIELLLLNLWQATKADASVSQKGNDW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14933; Mature: 14933

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLTYTESDFYIKRLAQSPKQLVALRVMLAMGVGKKIVVEPSSVAFLLPISLPELSMLE
CEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCEEEE
LAIEKEEGEYIDLCVADDEFVEVTLVGTWVTTLDPKQENGIFITALSDQIELLLLNLWQA
EEEECCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEECCCCEEHHHHHHCC
TKADASVSQKGNDW
CCCCCCCCCCCCCC
>Mature Secondary Structure
MLKLTYTESDFYIKRLAQSPKQLVALRVMLAMGVGKKIVVEPSSVAFLLPISLPELSMLE
CEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCEEEE
LAIEKEEGEYIDLCVADDEFVEVTLVGTWVTTLDPKQENGIFITALSDQIELLLLNLWQA
EEEECCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCEEEEEECCCCEEHHHHHHCC
TKADASVSQKGNDW
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA