| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478213
Identifier: 113478213
GI number: 113478213
Start: 7454726
End: 7455136
Strand: Reverse
Name: 113478213
Synonym: Tery_4868
Alternate gene names: NA
Gene position: 7455136-7454726 (Counterclockwise)
Preceding gene: 113478214
Following gene: 113478203
Centisome position: 96.19
GC content: 42.34
Gene sequence:
>411_bases ATGATGTCAGTGATTCACAAGCATTTTCTGAACTTGAGAAATGGAGTAGATGGGGAAATAGCCCAAGTATCAGGAGATGG AGCAGAGCACAAGTATAAATGTTACCAGAAAGCTAACCAACTAGGAGCAAAAGTAACAATTCCACCCAGGAAAAATGCAG TAATAGGTCAACACGGCAACTGCAAATGCCCACCTCATCCCAGAGATGAAAACCTCAGAAGAATCAGAAAGGTAGGACGC CAAAAATGGAAGCATGAAAGTGGTTACCATTGGCGTTCTCTATCAGAAACCACAATGTTTAGACTCAAAGTGAGCTTTGG AGGTCAGTTACGACGAGGAAAATTCGAAAGCCCAAGCAGTAGAGTTGTTCATACAATGTGCCATGCTGAACCGTATGATT CAAACAGGTAA
Upstream 100 bases:
>100_bases ACAAAAGTTCATGGTGTCAGTAAACGGCGTACATGGGGTAAATTACACCTAGGAGTAAATGAGGCTACAGGAGAGATTGT CAGTGGAGTAGTGACTACCA
Downstream 100 bases:
>100_bases ACCCAAAAGTCACAAAGTGAAAATCTAGTTACAGCACTTTTCAGGTAATTGAACCACAAAGTGCGGTAAAATGGGTTTGA TGTAATTGTTAAATTTAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 136; Mature: 136
Protein sequence:
>136_residues MMSVIHKHFLNLRNGVDGEIAQVSGDGAEHKYKCYQKANQLGAKVTIPPRKNAVIGQHGNCKCPPHPRDENLRRIRKVGR QKWKHESGYHWRSLSETTMFRLKVSFGGQLRRGKFESPSSRVVHTMCHAEPYDSNR
Sequences:
>Translated_136_residues MMSVIHKHFLNLRNGVDGEIAQVSGDGAEHKYKCYQKANQLGAKVTIPPRKNAVIGQHGNCKCPPHPRDENLRRIRKVGR QKWKHESGYHWRSLSETTMFRLKVSFGGQLRRGKFESPSSRVVHTMCHAEPYDSNR >Mature_136_residues MMSVIHKHFLNLRNGVDGEIAQVSGDGAEHKYKCYQKANQLGAKVTIPPRKNAVIGQHGNCKCPPHPRDENLRRIRKVGR QKWKHESGYHWRSLSETTMFRLKVSFGGQLRRGKFESPSSRVVHTMCHAEPYDSNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15620; Mature: 15620
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSVIHKHFLNLRNGVDGEIAQVSGDGAEHKYKCYQKANQLGAKVTIPPRKNAVIGQHGN CHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCEEECCCCC CKCPPHPRDENLRRIRKVGRQKWKHESGYHWRSLSETTMFRLKVSFGGQLRRGKFESPSS CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH RVVHTMCHAEPYDSNR HHHHHHHCCCCCCCCC >Mature Secondary Structure MMSVIHKHFLNLRNGVDGEIAQVSGDGAEHKYKCYQKANQLGAKVTIPPRKNAVIGQHGN CHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEECCCCCCEEECCCCC CKCPPHPRDENLRRIRKVGRQKWKHESGYHWRSLSETTMFRLKVSFGGQLRRGKFESPSS CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH RVVHTMCHAEPYDSNR HHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA