| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113478187
Identifier: 113478187
GI number: 113478187
Start: 7425907
End: 7426380
Strand: Reverse
Name: 113478187
Synonym: Tery_4832
Alternate gene names: NA
Gene position: 7426380-7425907 (Counterclockwise)
Preceding gene: 113478188
Following gene: 113478180
Centisome position: 95.82
GC content: 28.69
Gene sequence:
>474_bases ATGGAATTAGAATTAATAGTAGATAGCTCAGAACAAAGTAGAGAAAGACCAAAAGAATCTGAAAAACCAGAAAAATATTA TTCAGGAAACAAGAAAAATCATACCTTTAAAAATCAAATAATAACGACACCAAAAGGAACAGAAATAGTGGATGTAATTA TCGGAGAAAGGGGACCATTAAGTGATATAAATTTATTAAACAAACAACGGGAAAAATTTAAGGATAATCAATATTTTCAA GGGGATAAAGAAGATCAAGGAGCAGAAAGAACAAGCACACCAAAAAAGAAGCCAAGAAAAAAAGAAATGCCAGAAGAAAT AAAAGAAAAAAATCAACAAAAAGCCCAAAAAAGAATATTCGTAGAACATGTAATTAGATTACTAAAAATATTTGGAATTG CGAGAGAAAGATTTAGATTAAAAGAGAAAAGTTATGAGAAAGTAATAATGGTAGTATGTGGATTAGTGAGATGA
Upstream 100 bases:
>100_bases TCCATTACTGGATAAATATTTTACCAGATTTATTACCAGCTAGTTTATTAGAACAAGTCAAAAAAAAGAAGATGAATTAG AATGGGTAAAAGAAGCGTTA
Downstream 100 bases:
>100_bases AGAATAGGAGCATTAATATTAGTATAAAAAGAAGATAATAAATTAAGAGAATAAAGTGAAAATGGGGGGAAATAAATGTT GAATTAGTAAGAGAAAATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MELELIVDSSEQSRERPKESEKPEKYYSGNKKNHTFKNQIITTPKGTEIVDVIIGERGPLSDINLLNKQREKFKDNQYFQ GDKEDQGAERTSTPKKKPRKKEMPEEIKEKNQQKAQKRIFVEHVIRLLKIFGIARERFRLKEKSYEKVIMVVCGLVR
Sequences:
>Translated_157_residues MELELIVDSSEQSRERPKESEKPEKYYSGNKKNHTFKNQIITTPKGTEIVDVIIGERGPLSDINLLNKQREKFKDNQYFQ GDKEDQGAERTSTPKKKPRKKEMPEEIKEKNQQKAQKRIFVEHVIRLLKIFGIARERFRLKEKSYEKVIMVVCGLVR >Mature_157_residues MELELIVDSSEQSRERPKESEKPEKYYSGNKKNHTFKNQIITTPKGTEIVDVIIGERGPLSDINLLNKQREKFKDNQYFQ GDKEDQGAERTSTPKKKPRKKEMPEEIKEKNQQKAQKRIFVEHVIRLLKIFGIARERFRLKEKSYEKVIMVVCGLVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18535; Mature: 18535
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELELIVDSSEQSRERPKESEKPEKYYSGNKKNHTFKNQIITTPKGTEIVDVIIGERGPL CCEEEEECCCHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCEEEHEEECCCCCC SDINLLNKQREKFKDNQYFQGDKEDQGAERTSTPKKKPRKKEMPEEIKEKNQQKAQKRIF HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHH VEHVIRLLKIFGIARERFRLKEKSYEKVIMVVCGLVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MELELIVDSSEQSRERPKESEKPEKYYSGNKKNHTFKNQIITTPKGTEIVDVIIGERGPL CCEEEEECCCHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCEEEHEEECCCCCC SDINLLNKQREKFKDNQYFQGDKEDQGAERTSTPKKKPRKKEMPEEIKEKNQQKAQKRIF HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHH VEHVIRLLKIFGIARERFRLKEKSYEKVIMVVCGLVR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA