Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113478157

Identifier: 113478157

GI number: 113478157

Start: 7369774

End: 7370706

Strand: Reverse

Name: 113478157

Synonym: Tery_4794

Alternate gene names: NA

Gene position: 7370706-7369774 (Counterclockwise)

Preceding gene: 113478159

Following gene: 113478155

Centisome position: 95.1

GC content: 29.8

Gene sequence:

>933_bases
ATGAAAGGTATATTGATATTTTTAGCTATTGTAATTTGTTTATTGGGGGTATTAGAAATAGGACTCCGCTTAGTCTTTGG
TTTTGGTAATCCTCTTACTTATAATATAGATAGTAAAATTGGTTATCTTTTGACACCAAATCAAAGTGTTACTCGCTTTG
GTAACCGGATAAAAATTAATCAGTATTCTATGCGTTCTGACCCGATAGAAGAGTCAAAAGAAAATATTACATTGAGAATA
CTTTTGTTAGGAGACTCTGTAGCGAATGGTAGTTGGTGGACAGATCAAAATGACACAATTTCTGCAATTATAGAGAAACA
ATTAAATGAAAAATTAGGTCAAAATAAAACTGTTGAAGTTTTTAATGCTTCAGCTAATTCTTGGGGACCTAGAAATGAAC
TTGCTTATTTAGAAAAGTTCGGTTTATTTAATTCTCAAACTATAGTATTACTGATTAATACTGATGATTTATTTGCTAAA
GCACCTAGCTCATTAGTGGTAGGAGTTCATCGGAGTTATCCAGACAAAAAACCTCTTTCTGCAATAACTGAAGTGATTAG
TCGTTATTTATTGCCGACAGCAAAAATTCCAGAAATTCAGGAAGAAGAAGAAAAAGTTAGTTTTAATTTAGCAGCAATCA
AAAAAATTCAGGAAATTACTAATCAAAACAATACTAAATTTATCTTGGTAATGACTCCTTTGCTTAGGGAAGTAGGCAAA
CCAGGACCTCGTGATTATGAAATTAAAACTCGTAAATTGTTAGAGGAATTTAACCAAGCTGAAAATATTTTATATTTAGA
TCTATTACCAATTTTTAAATCTGTATTAGAACCAGATAGTTTGTATCGAGATAATATTCATTTAAGTATTAAAGGAAATC
AGATTGTTAGTGAAATGATTAGTAAGTTAATTATTAATCATAGTCAGTTTTAA

Upstream 100 bases:

>100_bases
ATCAAGGTTGGTAAAAAAAATTAATATGTATAAATTTTTTCACCAAGTTATTCATGGGTATTGCTAATAATTTACGGAAT
TTATTAAAAATTTTAGATTA

Downstream 100 bases:

>100_bases
AGAATGTAATAGTTATGTTATAAAGATTTTGGAAGCTGAGAATAGAAACCTGATTATTGATAATGTTATAAAGTTTCTAT
TTAGTGTAGTTAATTGAATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MKGILIFLAIVICLLGVLEIGLRLVFGFGNPLTYNIDSKIGYLLTPNQSVTRFGNRIKINQYSMRSDPIEESKENITLRI
LLLGDSVANGSWWTDQNDTISAIIEKQLNEKLGQNKTVEVFNASANSWGPRNELAYLEKFGLFNSQTIVLLINTDDLFAK
APSSLVVGVHRSYPDKKPLSAITEVISRYLLPTAKIPEIQEEEEKVSFNLAAIKKIQEITNQNNTKFILVMTPLLREVGK
PGPRDYEIKTRKLLEEFNQAENILYLDLLPIFKSVLEPDSLYRDNIHLSIKGNQIVSEMISKLIINHSQF

Sequences:

>Translated_310_residues
MKGILIFLAIVICLLGVLEIGLRLVFGFGNPLTYNIDSKIGYLLTPNQSVTRFGNRIKINQYSMRSDPIEESKENITLRI
LLLGDSVANGSWWTDQNDTISAIIEKQLNEKLGQNKTVEVFNASANSWGPRNELAYLEKFGLFNSQTIVLLINTDDLFAK
APSSLVVGVHRSYPDKKPLSAITEVISRYLLPTAKIPEIQEEEEKVSFNLAAIKKIQEITNQNNTKFILVMTPLLREVGK
PGPRDYEIKTRKLLEEFNQAENILYLDLLPIFKSVLEPDSLYRDNIHLSIKGNQIVSEMISKLIINHSQF
>Mature_310_residues
MKGILIFLAIVICLLGVLEIGLRLVFGFGNPLTYNIDSKIGYLLTPNQSVTRFGNRIKINQYSMRSDPIEESKENITLRI
LLLGDSVANGSWWTDQNDTISAIIEKQLNEKLGQNKTVEVFNASANSWGPRNELAYLEKFGLFNSQTIVLLINTDDLFAK
APSSLVVGVHRSYPDKKPLSAITEVISRYLLPTAKIPEIQEEEEKVSFNLAAIKKIQEITNQNNTKFILVMTPLLREVGK
PGPRDYEIKTRKLLEEFNQAENILYLDLLPIFKSVLEPDSLYRDNIHLSIKGNQIVSEMISKLIINHSQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35094; Mature: 35094

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGILIFLAIVICLLGVLEIGLRLVFGFGNPLTYNIDSKIGYLLTPNQSVTRFGNRIKIN
CCHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCEEEEECCCHHHHHCCCEEEEE
QYSMRSDPIEESKENITLRILLLGDSVANGSWWTDQNDTISAIIEKQLNEKLGQNKTVEV
EECCCCCCCHHCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
FNASANSWGPRNELAYLEKFGLFNSQTIVLLINTDDLFAKAPSSLVVGVHRSYPDKKPLS
EECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCCEEEEECCCCCCCCHHH
AITEVISRYLLPTAKIPEIQEEEEKVSFNLAAIKKIQEITNQNNTKFILVMTPLLREVGK
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCC
PGPRDYEIKTRKLLEEFNQAENILYLDLLPIFKSVLEPDSLYRDNIHLSIKGNQIVSEMI
CCCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCCHHHHCCEEEEEECHHHHHHHH
SKLIINHSQF
HHHHHCCCCC
>Mature Secondary Structure
MKGILIFLAIVICLLGVLEIGLRLVFGFGNPLTYNIDSKIGYLLTPNQSVTRFGNRIKIN
CCHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCEEEEECCCHHHHHCCCEEEEE
QYSMRSDPIEESKENITLRILLLGDSVANGSWWTDQNDTISAIIEKQLNEKLGQNKTVEV
EECCCCCCCHHCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
FNASANSWGPRNELAYLEKFGLFNSQTIVLLINTDDLFAKAPSSLVVGVHRSYPDKKPLS
EECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCCEEEEECCCCCCCCHHH
AITEVISRYLLPTAKIPEIQEEEEKVSFNLAAIKKIQEITNQNNTKFILVMTPLLREVGK
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCC
PGPRDYEIKTRKLLEEFNQAENILYLDLLPIFKSVLEPDSLYRDNIHLSIKGNQIVSEMI
CCCCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCCHHHHCCEEEEEECHHHHHHHH
SKLIINHSQF
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA