| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is ycbX [C]
Identifier: 113477964
GI number: 113477964
Start: 7040951
End: 7041754
Strand: Reverse
Name: ycbX [C]
Synonym: Tery_4576
Alternate gene names: 113477964
Gene position: 7041754-7040951 (Counterclockwise)
Preceding gene: 113477967
Following gene: 113477963
Centisome position: 90.86
GC content: 41.29
Gene sequence:
>804_bases ATGAAAATAGCAACAGTCAAACAGTTATTTATTCATCCAGTTAAGGGGTTAACTCCTCAAGTTTGTCAGCATCTTTCCCT AACTGCAGGTCATGGCATTCAAGGCGATCGCGCATTTGCTCTGATGTTTCTGGACTCTGAGAAACCCAAGCAACCTAAAG TTGTACCTTGGATGAGTAAAAAGCATTTTGCTGTGCAGAATGACTGGCCTGGTTTAGCGGCTTTAGATTGTAATTTTGAT GAGGAAACAGAATTTTTAACTGTGGGACGGCAAGGGGTTGAGTTGGTCAGGGAAAATACAAGTTTATCTGAAGGGCGCGA TCGCCTTAGTGGTTTTTTTACAAATTATTTGACTACTCTAGAACCCAATAAAGGAGGGCGTCATCCTCAAAAAGCACCTC TGCAGTTAGTGGGAAATGGGAAAACCAGTCGTTATCCTGACCGGGAACCCGTACATATTTCTATTATTAGTCAAGCAACA ATGGATGATTTGGGAGAAAAGACTGGTCAAATATTAGACGTGCGGAGGTTTCGCCCTAATATAGTTGTGACAGGAATAGA TGCTTGGTCAGAATTTGATTTGGTGGGGAAACAGTTATCTTTGGGTGATGCTCAAATTACTGTTACTGCTAAAATTGGGC GGTGTATGAATATTGAGGTTGACCCAGAAACAGGCGATCGAGATGTTCCATTATTGTCGGTGTTGAAAGAAAAATATGGT CACTCTTACACAGGAGTATTAGCAACTGTTGAGAGTGATGGAGTGGTAGCAGTGGGAAATATTTTACAGGTTTTGAATGA TTGA
Upstream 100 bases:
>100_bases TATTGCTCTAGTAAGTTAAAAATCTATCTTTTTTGTTACTGGAACAATACTAAAAATAAAAACTTTTTTATGAGTTATTA AACCAATACTATATAATAAC
Downstream 100 bases:
>100_bases ATAATTAAAACATTCAATTATTCAATTATTATGGTTCAATTTTTTTTAGTTACCTATCATGATAGCGGTTTTGAGATTGA TAAATTATGTAGTCAAAACC
Product: MOSC domain-containing protein
Products: NA
Alternate protein names: MOSC Domain Containing Protein; Mosc Domain Protein; MOSC Domain Protein; Transcriptional Regulator; Mosc Domain; Xylene Monooxygenase Electron Transfer Component; Mosc Domain Containing Protein
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MKIATVKQLFIHPVKGLTPQVCQHLSLTAGHGIQGDRAFALMFLDSEKPKQPKVVPWMSKKHFAVQNDWPGLAALDCNFD EETEFLTVGRQGVELVRENTSLSEGRDRLSGFFTNYLTTLEPNKGGRHPQKAPLQLVGNGKTSRYPDREPVHISIISQAT MDDLGEKTGQILDVRRFRPNIVVTGIDAWSEFDLVGKQLSLGDAQITVTAKIGRCMNIEVDPETGDRDVPLLSVLKEKYG HSYTGVLATVESDGVVAVGNILQVLND
Sequences:
>Translated_267_residues MKIATVKQLFIHPVKGLTPQVCQHLSLTAGHGIQGDRAFALMFLDSEKPKQPKVVPWMSKKHFAVQNDWPGLAALDCNFD EETEFLTVGRQGVELVRENTSLSEGRDRLSGFFTNYLTTLEPNKGGRHPQKAPLQLVGNGKTSRYPDREPVHISIISQAT MDDLGEKTGQILDVRRFRPNIVVTGIDAWSEFDLVGKQLSLGDAQITVTAKIGRCMNIEVDPETGDRDVPLLSVLKEKYG HSYTGVLATVESDGVVAVGNILQVLND >Mature_267_residues MKIATVKQLFIHPVKGLTPQVCQHLSLTAGHGIQGDRAFALMFLDSEKPKQPKVVPWMSKKHFAVQNDWPGLAALDCNFD EETEFLTVGRQGVELVRENTSLSEGRDRLSGFFTNYLTTLEPNKGGRHPQKAPLQLVGNGKTSRYPDREPVHISIISQAT MDDLGEKTGQILDVRRFRPNIVVTGIDAWSEFDLVGKQLSLGDAQITVTAKIGRCMNIEVDPETGDRDVPLLSVLKEKYG HSYTGVLATVESDGVVAVGNILQVLND
Specific function: Unknown
COG id: COG3217
COG function: function code R; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29419; Mature: 29419
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIATVKQLFIHPVKGLTPQVCQHLSLTAGHGIQGDRAFALMFLDSEKPKQPKVVPWMSK CCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC KHFAVQNDWPGLAALDCNFDEETEFLTVGRQGVELVRENTSLSEGRDRLSGFFTNYLTTL CCEEEECCCCCEEEEECCCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEE EPNKGGRHPQKAPLQLVGNGKTSRYPDREPVHISIISQATMDDLGEKTGQILDVRRFRPN CCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCEEEHEECCCC IVVTGIDAWSEFDLVGKQLSLGDAQITVTAKIGRCMNIEVDPETGDRDVPLLSVLKEKYG EEEEECCCCCHHHHHCCEECCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHC HSYTGVLATVESDGVVAVGNILQVLND CCEEEEEEEECCCCEEEHHHHHHHHCC >Mature Secondary Structure MKIATVKQLFIHPVKGLTPQVCQHLSLTAGHGIQGDRAFALMFLDSEKPKQPKVVPWMSK CCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC KHFAVQNDWPGLAALDCNFDEETEFLTVGRQGVELVRENTSLSEGRDRLSGFFTNYLTTL CCEEEECCCCCEEEEECCCCCCCCEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEE EPNKGGRHPQKAPLQLVGNGKTSRYPDREPVHISIISQATMDDLGEKTGQILDVRRFRPN CCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCEEEHEECCCC IVVTGIDAWSEFDLVGKQLSLGDAQITVTAKIGRCMNIEVDPETGDRDVPLLSVLKEKYG EEEEECCCCCHHHHHCCEECCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHC HSYTGVLATVESDGVVAVGNILQVLND CCEEEEEEEECCCCEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA