| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113477937
Identifier: 113477937
GI number: 113477937
Start: 7009369
End: 7009728
Strand: Reverse
Name: 113477937
Synonym: Tery_4545
Alternate gene names: NA
Gene position: 7009728-7009369 (Counterclockwise)
Preceding gene: 113477938
Following gene: 113477930
Centisome position: 90.45
GC content: 28.06
Gene sequence:
>360_bases ATGGGCATAGAAGCCATGTTTAAGGATTATAAAACTGGTGGTTATAATCTAGAATCAGCAAAAGCCAACGAAACTAGACT TAATAATCTAATTTTATTAATAGCTATTTCATACACAATTAGTTCATTTAAAGGACAAGAAATTAAAAATAAAGGAGTTC AAGAATATATATCAAGAACTAATGAAAGAGGTAGAAAAGAAAGAAGAAACAGTAGTTTTTGCTTAGGGTTATCTAGTATT TATTGGGCAATAAATGATGATTTAATGTGGAAATTAGTAGAAAATTTAATGAGCCTTAATCCTCATAAATTACTATATTA TCGCAGGGGAATAAAAGCGATGAATAAAGTGGTTAATTAG
Upstream 100 bases:
>100_bases AAGACAGAAATATCGTCACAATTCTGTTTCAGAGAAATGGTATACTCTCTCCAATTTATCATAGTAATGTGGAAAAGTTA AAAAAATATATAGCCAGAGA
Downstream 100 bases:
>100_bases ACTGTAATTTTTGATTAAAAATTAATTAATAAAGTTAAGTTTTTTCATGATATTATTCTACTGCACAACTTGAATTATTA TTCAACCCAGTTAGGGGGTG
Product: putative transposase
Products: NA
Alternate protein names: Transposase IS4 Family Protein; IS4 Family Transposase
Number of amino acids: Translated: 119; Mature: 118
Protein sequence:
>119_residues MGIEAMFKDYKTGGYNLESAKANETRLNNLILLIAISYTISSFKGQEIKNKGVQEYISRTNERGRKERRNSSFCLGLSSI YWAINDDLMWKLVENLMSLNPHKLLYYRRGIKAMNKVVN
Sequences:
>Translated_119_residues MGIEAMFKDYKTGGYNLESAKANETRLNNLILLIAISYTISSFKGQEIKNKGVQEYISRTNERGRKERRNSSFCLGLSSI YWAINDDLMWKLVENLMSLNPHKLLYYRRGIKAMNKVVN >Mature_118_residues GIEAMFKDYKTGGYNLESAKANETRLNNLILLIAISYTISSFKGQEIKNKGVQEYISRTNERGRKERRNSSFCLGLSSIY WAINDDLMWKLVENLMSLNPHKLLYYRRGIKAMNKVVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13788; Mature: 13657
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIEAMFKDYKTGGYNLESAKANETRLNNLILLIAISYTISSFKGQEIKNKGVQEYISRT CCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHH NERGRKERRNSSFCLGLSSIYWAINDDLMWKLVENLMSLNPHKLLYYRRGIKAMNKVVN HHHHHHHHCCCCEEEEHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GIEAMFKDYKTGGYNLESAKANETRLNNLILLIAISYTISSFKGQEIKNKGVQEYISRT CHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHH NERGRKERRNSSFCLGLSSIYWAINDDLMWKLVENLMSLNPHKLLYYRRGIKAMNKVVN HHHHHHHHCCCCEEEEHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA