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The map label for this gene is rpoD [H]

Identifier: 113477826

GI number: 113477826

Start: 6821260

End: 6822414

Strand: Reverse

Name: rpoD [H]

Synonym: Tery_4426

Alternate gene names: 113477826

Gene position: 6822414-6821260 (Counterclockwise)

Preceding gene: 113477827

Following gene: 113477825

Centisome position: 88.03

GC content: 38.35

Gene sequence:

>1155_bases
ATGAAAATTCTACTTCCCAATAATTCAGGTAAGCATCAAATCTCATCACCAGACTCCAATAATAAATCAGACATGGCAGA
TCAGATGAAACAAATCAGTTTGATCGTTGCCGAATCTCTACATAAAGAAACTCAAAATCAGGAGAATTCTAGTATGAATA
TATCAGCTACAACCATTCCAGTCTCAGAAAATCAACAAGATATAGATGATGCAGTAGGAGCATTATTTAAGCAAATGTCT
CGTTATCCTCTTCTGAATCAAAAAGAAGAAATAGAATTAGCGAAGTTAATTCAAGAGTTAGTAGTATTTGAAAAACTGCC
AGAGAAACTGGCAAATGACTTAGGACGAACACCTACAAAATCTGAAGTAGCAGTCGCAGCAGGTTTCACAGAATCACAAC
TAGATCATCGCTTACATCAGTGTCGAACAGCCAAACGTCGAATGATTAGTTCTAACCTGCGTCTAGTAGTTTCAATTGCC
AAGCGTTATCTAAACCGTGGGGTACCTTTTCTAGATTTGATTCAAGAAGGAGCATTAGGATTAAATCGCGCCGCTGAAAA
ATTTGATCCAGATAAGGGCTATAAGTTTTCTACTTATGCCTATTGGTGGATTCGTCAAGGAATAACCCGCACCATTGCTA
ACCAAGGACGTACTATTCGTCTACCAGTTCATGTAGTTGAACAAATTAACAAACTTAGACGAGTTTACCGCGACCTAAGA
CGGAGTTTAAATCGTATTCCCAATGACACAGAAATTGCTCAAGAACTAGAAATTTCTCTCCCACAACTGCGCAACCTACA
GCAAATTCGTCGGAAAACTCTCTCTCTGAATCATCGTTTAGGTACTGACGAAAATACTGAACTGTTAGATTTCTTAGAAG
ATAATGAAAATAGTACTCCAGAAGCACAAATGAATGATATGATGATGCGCCAGGATATCTTGGAGGTATTAAATCATGTA
TTAAGCAATCGTGAGCAAGATGTCATCAGTCTCCGCTATGGTTTAATCACAGGAGAACCTCATACTTTGGATGAAGTTAG
TCGGATGATTAATCTTTCTCGGGAACGAGTACGACAAATTCAAGCTAAAGCAATGCGAAAGTTACGTCGCCCTCAAGTGG
CTGAACGTTTAAAAGGATGGTTGAATCGTTTTTAA

Upstream 100 bases:

>100_bases
TCAAGTAATAATTGAGGTTTCTGGTATAAATTAACACTTCCATTATATCTTATAAACTATTTACGATCAGCAAACTATAT
AATAGAAAAAAACACGAATT

Downstream 100 bases:

>100_bases
TTAAATTCAAAATCATATCGCTGTCAGCTAAAGTCCCAACGATTTGTCGTCAAGAACTCCAATTTTATCAATATCCTAAC
ACTTTTTTATAGTGCTATAG

Product: RNA polymerase, sigma 28 subunit

Products: NA

Alternate protein names: Sigma-A [H]

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKILLPNNSGKHQISSPDSNNKSDMADQMKQISLIVAESLHKETQNQENSSMNISATTIPVSENQQDIDDAVGALFKQMS
RYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIA
KRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLR
RSLNRIPNDTEIAQELEISLPQLRNLQQIRRKTLSLNHRLGTDENTELLDFLEDNENSTPEAQMNDMMMRQDILEVLNHV
LSNREQDVISLRYGLITGEPHTLDEVSRMINLSRERVRQIQAKAMRKLRRPQVAERLKGWLNRF

Sequences:

>Translated_384_residues
MKILLPNNSGKHQISSPDSNNKSDMADQMKQISLIVAESLHKETQNQENSSMNISATTIPVSENQQDIDDAVGALFKQMS
RYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIA
KRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLR
RSLNRIPNDTEIAQELEISLPQLRNLQQIRRKTLSLNHRLGTDENTELLDFLEDNENSTPEAQMNDMMMRQDILEVLNHV
LSNREQDVISLRYGLITGEPHTLDEVSRMINLSRERVRQIQAKAMRKLRRPQVAERLKGWLNRF
>Mature_384_residues
MKILLPNNSGKHQISSPDSNNKSDMADQMKQISLIVAESLHKETQNQENSSMNISATTIPVSENQQDIDDAVGALFKQMS
RYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIA
KRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLR
RSLNRIPNDTEIAQELEISLPQLRNLQQIRRKTLSLNHRLGTDENTELLDFLEDNENSTPEAQMNDMMMRQDILEVLNHV
LSNREQDVISLRYGLITGEPHTLDEVSRMINLSRERVRQIQAKAMRKLRRPQVAERLKGWLNRF

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This is the primary sigma factor of this bacterium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1789448, Length=243, Percent_Identity=44.8559670781893, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1789098, Length=227, Percent_Identity=47.136563876652, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789871, Length=253, Percent_Identity=27.6679841897233, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788231, Length=203, Percent_Identity=25.1231527093596, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 700 (log & stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR012760
- InterPro:   IPR017848
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 44381; Mature: 44381

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLPNNSGKHQISSPDSNNKSDMADQMKQISLIVAESLHKETQNQENSSMNISATTIP
CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
VSENQQDIDDAVGALFKQMSRYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTK
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SEVAVAAGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALG
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
LNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLR
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
RSLNRIPNDTEIAQELEISLPQLRNLQQIRRKTLSLNHRLGTDENTELLDFLEDNENSTP
HHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
EAQMNDMMMRQDILEVLNHVLSNREQDVISLRYGLITGEPHTLDEVSRMINLSRERVRQI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHH
QAKAMRKLRRPQVAERLKGWLNRF
HHHHHHHHHCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKILLPNNSGKHQISSPDSNNKSDMADQMKQISLIVAESLHKETQNQENSSMNISATTIP
CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
VSENQQDIDDAVGALFKQMSRYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTK
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SEVAVAAGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALG
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
LNRAAEKFDPDKGYKFSTYAYWWIRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLR
HHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHH
RSLNRIPNDTEIAQELEISLPQLRNLQQIRRKTLSLNHRLGTDENTELLDFLEDNENSTP
HHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
EAQMNDMMMRQDILEVLNHVLSNREQDVISLRYGLITGEPHTLDEVSRMINLSRERVRQI
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHH
QAKAMRKLRRPQVAERLKGWLNRF
HHHHHHHHHCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1901566; 11759840 [H]