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The map label for this gene is cbbS [H]

Identifier: 113477808

GI number: 113477808

Start: 6790587

End: 6790922

Strand: Reverse

Name: cbbS [H]

Synonym: Tery_4408

Alternate gene names: 113477808

Gene position: 6790922-6790587 (Counterclockwise)

Preceding gene: 113477809

Following gene: 113477807

Centisome position: 87.62

GC content: 37.5

Gene sequence:

>336_bases
ATGAGAACATTACCAAAAGAGCGTCGTTACGAGACCCTTTCCTATTTACCTCCTCTAACTGATCTTCAAATTCGTAAACA
ACTACAATACATTTTGGATCAAGGGTTTATTGCTGGTGTAGAGTTTAGTGAGTCTTCTGATGCAGAAATGCACTACTGGA
CTTTGTGGAAGTTACCTCTGTTCCAAGCCAGAACAATTGATGAAGTTTTAGTAGAAATTGATGCTTGCCGTAGTGAAAAT
CCTGACTGCTTTATTCGTGTAATGGGTTTTGATAATGTGAAGCAATGTCAAGTATTGAGCTTTATCGTACACAAGCCTAA
TCAAAGAAGATACTAA

Upstream 100 bases:

>100_bases
CACCAGAAGCAGGAAGTAAACATTAATATTTCACTAATTGTGATGTTTTATATCAGTTTAATGAAGCAGGTTGTACATTA
ATTAAACAGTAAAAAAAAAC

Downstream 100 bases:

>100_bases
TTTACTAATTTAGAAAATCCTGGGATAGGCGATAGTCTGTCCCACTGTTTTTTTTATAGTATCCGCTAAATTATTTATAA
TTAGAGATACTAGACCAAAC

Product: ribulose 1,5-bisphosphate carboxylase small subunit

Products: NA

Alternate protein names: RuBisCO small subunit [H]

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MRTLPKERRYETLSYLPPLTDLQIRKQLQYILDQGFIAGVEFSESSDAEMHYWTLWKLPLFQARTIDEVLVEIDACRSEN
PDCFIRVMGFDNVKQCQVLSFIVHKPNQRRY

Sequences:

>Translated_111_residues
MRTLPKERRYETLSYLPPLTDLQIRKQLQYILDQGFIAGVEFSESSDAEMHYWTLWKLPLFQARTIDEVLVEIDACRSEN
PDCFIRVMGFDNVKQCQVLSFIVHKPNQRRY
>Mature_111_residues
MRTLPKERRYETLSYLPPLTDLQIRKQLQYILDQGFIAGVEFSESSDAEMHYWTLWKLPLFQARTIDEVLVEIDACRSEN
PDCFIRVMGFDNVKQCQVLSFIVHKPNQRRY

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG4451

COG function: function code C; Ribulose bisphosphate carboxylase small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO small chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000894 [H]

Pfam domain/function: PF00101 RuBisCO_small [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 13229; Mature: 13229

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTLPKERRYETLSYLPPLTDLQIRKQLQYILDQGFIAGVEFSESSDAEMHYWTLWKLPL
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCC
FQARTIDEVLVEIDACRSENPDCFIRVMGFDNVKQCQVLSFIVHKPNQRRY
CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRTLPKERRYETLSYLPPLTDLQIRKQLQYILDQGFIAGVEFSESSDAEMHYWTLWKLPL
CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECCCC
FQARTIDEVLVEIDACRSENPDCFIRVMGFDNVKQCQVLSFIVHKPNQRRY
CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8219082; 8590279; 8905231 [H]