Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477807

Identifier: 113477807

GI number: 113477807

Start: 6789847

End: 6790281

Strand: Reverse

Name: 113477807

Synonym: Tery_4407

Alternate gene names: NA

Gene position: 6790281-6789847 (Counterclockwise)

Preceding gene: 113477808

Following gene: 113477801

Centisome position: 87.62

GC content: 34.48

Gene sequence:

>435_bases
ATGGTTAAAGTTTTTATAAGTTCTGTTATCAATGCTCATATTGATCAAGTATGGATGAAGACTAGAAATTTTAATTCTCT
ACCTAGATGGCATCCAGTTGTTGCTACCAGTTTCATAGAAGATAATAAGGCAGCTGATGAAATTGGCTGTGTTCGTAGTG
TAAATTTCATAGAAGGCGGATCTATTCGCGAAAAGCTATTAGTTCTGAGCGACTTAAATTATTTATACTCTTACTCAATT
CTAGAATCTTCCTTCCCTCTCAGGAACTATGTAGCAACATTACAGTTTAAGCCTATCACAGATGGAGATTTAACTTATGC
TGAATGGACAAGCACATTCGACTGTGACCCCCAAAAAGAAAAGAATCTGATTAAATTATTAAGTGATATTTATCAGAGAG
GTTTCAGCTCATTGAAGGAGATATTTCAGAATTAG

Upstream 100 bases:

>100_bases
TTAATATCAAAGAGTTAAGCTTAAATTTTTGTAGTACTATCACAAAAACTTAGTTTATGATCTACATATTGGATAATAGA
GTATCAAAAATATTTAAATA

Downstream 100 bases:

>100_bases
TCCTGCTCGCGTAATGGTTTTGATTCAAATAATAGCGAACCGCTGTGGATATCCGCAATATGAAATACCCCTAAAGGTTT
TATATAATAAAGTTATAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MVKVFISSVINAHIDQVWMKTRNFNSLPRWHPVVATSFIEDNKAADEIGCVRSVNFIEGGSIREKLLVLSDLNYLYSYSI
LESSFPLRNYVATLQFKPITDGDLTYAEWTSTFDCDPQKEKNLIKLLSDIYQRGFSSLKEIFQN

Sequences:

>Translated_144_residues
MVKVFISSVINAHIDQVWMKTRNFNSLPRWHPVVATSFIEDNKAADEIGCVRSVNFIEGGSIREKLLVLSDLNYLYSYSI
LESSFPLRNYVATLQFKPITDGDLTYAEWTSTFDCDPQKEKNLIKLLSDIYQRGFSSLKEIFQN
>Mature_144_residues
MVKVFISSVINAHIDQVWMKTRNFNSLPRWHPVVATSFIEDNKAADEIGCVRSVNFIEGGSIREKLLVLSDLNYLYSYSI
LESSFPLRNYVATLQFKPITDGDLTYAEWTSTFDCDPQKEKNLIKLLSDIYQRGFSSLKEIFQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16595; Mature: 16595

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKVFISSVINAHIDQVWMKTRNFNSLPRWHPVVATSFIEDNKAADEIGCVRSVNFIEGG
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
SIREKLLVLSDLNYLYSYSILESSFPLRNYVATLQFKPITDGDLTYAEWTSTFDCDPQKE
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCCCCHHHCCCCCCCCCHHH
KNLIKLLSDIYQRGFSSLKEIFQN
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVKVFISSVINAHIDQVWMKTRNFNSLPRWHPVVATSFIEDNKAADEIGCVRSVNFIEGG
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
SIREKLLVLSDLNYLYSYSILESSFPLRNYVATLQFKPITDGDLTYAEWTSTFDCDPQKE
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCCCCCCHHHCCCCCCCCCHHH
KNLIKLLSDIYQRGFSSLKEIFQN
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA