Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477767

Identifier: 113477767

GI number: 113477767

Start: 6725215

End: 6726819

Strand: Reverse

Name: 113477767

Synonym: Tery_4363

Alternate gene names: NA

Gene position: 6726819-6725215 (Counterclockwise)

Preceding gene: 113477768

Following gene: 113477766

Centisome position: 86.8

GC content: 41.5

Gene sequence:

>1605_bases
ATGGAACTTTTGGAGTTATACCTGTCACCCCTTGATGACTCTACTAAATTTGAGGTTATTGTGACTGACTCTCCTGCGGG
ACAGGGAAGGAATGAGTCATTGTTGCCTTTTTTGGATGCTGAATGGGACTGGCGCATTACTGTGATTAGAAGTTTGGAGG
TTTCTACTTTCCGTCCTGAGTTTTTTTCTGCACAGGAACAGGAATGGATGAGCCAAGCGGGTATTTTAGGAAGCGATCGC
TCAAATTTCCATCCTAATTATTTGATCAATATCGGTAAAGCTCTTTACTCTTCTCTGTTTCCTCCAGGTAGTAAGGTAGA
AAATTTATTGCAGAAGTCTATTAGTTTTGCTGAATCTAAATCTACTAAACTGTTGGTGCGGTTGAAACTTGACGGGGATG
TGGCCCAGAAAACGCGACTGGCAGATTATCCTTGGGAACTTTTGCACAACCAAGGCTTTCTCTGTCATTACCAAGTTGAG
TTTTCTCGGTATATTGCCTATCCATCTGTTCCTCCTAACTTACCCACAGCGGAAAAACTGAATGTTTTATTGGTATCCTC
CGCCGCATCTGATCATAAACTTAATCTCCAACCTCTGTCCCGCAAGGAACAAAAGGCTGTTCTTAAGGGGTTGGAAAAAG
CTAGAGATCGAGGGGATATTTTTTTGGCACAACTGGAAGAACCTACTTTGGATGAGTTAAGAAATTATCTGACAGAACAT
CGGGGGGATAAGGGACCCCATGTGATCCATTTTGATGGACATGGTTTGTTTGGCCAACGTTGTCCTAATTCTGAATGTGG
GGCGATGAATGGGGGGACAAAATCTCGACGATGCCGTAAGTGTGAGACAGAGTTGCCTTTGCCTCAGGGATATCTGGTTT
TTGAGGATAAGGATGGAGATGCTGATTATATTAGTGGTCAAGAATTGGGTACTCTGCTGCAACAGTCTGGTTTGAGGGAT
GGTAATGGTAAAACAGAGGGTGTGGTTTTGGTGGTGTTGAGTGCTTGTCAGTCGGGAATGGCTATAGTGGGAGAGTCTGT
GTTTAATGGTGCTGCTCAAAGTCTGATTGCTCATCGGGTGCCGGCGGTGGTGGCCATGCAATATTCTGTGAGGGTAGACA
GTGCAACTAAGTTTGCTGAACAATTTTATCGTTCTCTGGGACAGAAAAATTCTCTAGCGGTGGCTGTTAGTCAGGGGCGG
GCAGCCATGGGTGTGGATGGAAATCAGTGGTATCGTCCCGTGCTTTATTTGCGCTGGCAGGATAATGAGGGGGGCCAATT
GTTTGTTACTCAATCTACGATAAAAAGTATAAATAAGAGTGTAAATAAGCCAATTCCGAGCAATCATCCACCAATTATAG
AGGATCAAATAAAATTAAGTTTGAGAGCAATTCCCAATCAAAACATTAATAACATTAATTCGCCAGAAATCTTAGTAGTT
GATACTGTAGTTGATACTTTAGCAACATTATCAGAATTAAAAGCTGGACTCTATAAGCTCTATAAAAAGTGCAAAGAACC
AAAAATTTTAGAAGAAATAGAAAAAATAGAACATTTAGAGTTTAATCAAAAAAAGTTATTACAATCAGAGTTATACAGTA
GATAA

Upstream 100 bases:

>100_bases
AATAATTTCGCGAAATTACTGAGGGGGTAAAAGTTTTGATCTATTAAAATCTCACTTTTAACTTTTAACTTTTAACTTTT
GACTTTTGACTTTTAGAGCT

Downstream 100 bases:

>100_bases
AATTAAAATGCCAGAACCACTAACATTAGAACTATATAGAAAAATAGGGATTGCATACCATTCGCTAGGAAAATTTGAAC
GCTCCATTGAATATTTTCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Chase2 Sensor Protein

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPEFFSAQEQEWMSQAGILGSDR
SNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESKSTKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVE
FSRYIAYPSVPPNLPTAEKLNVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH
RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGDADYISGQELGTLLQQSGLRD
GNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRVPAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGR
AAMGVDGNQWYRPVLYLRWQDNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV
DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR

Sequences:

>Translated_534_residues
MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPEFFSAQEQEWMSQAGILGSDR
SNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESKSTKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVE
FSRYIAYPSVPPNLPTAEKLNVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH
RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGDADYISGQELGTLLQQSGLRD
GNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRVPAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGR
AAMGVDGNQWYRPVLYLRWQDNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV
DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR
>Mature_534_residues
MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPEFFSAQEQEWMSQAGILGSDR
SNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESKSTKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVE
FSRYIAYPSVPPNLPTAEKLNVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH
RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGDADYISGQELGTLLQQSGLRD
GNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRVPAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGR
AAMGVDGNQWYRPVLYLRWQDNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV
DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59723; Mature: 59723

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPE
CCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEEEEECCCCCCH
FFSAQEQEWMSQAGILGSDRSNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESK
HHCHHHHHHHHHCCCCCCCCCCCCCHHEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
STKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVEFSRYIAYPSVPPNLPTAEKL
CCEEEEEEEECCCHHHHHHCCCCCHHHHCCCCCEEEEEEEEEHEEECCCCCCCCCCHHHC
NVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH
EEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGD
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCC
ADYISGQELGTLLQQSGLRDGNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRV
CCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHC
PAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGRAAMGVDGNQWYRPVLYLRWQ
CCEEEEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCEECEEEEEEEE
DNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV
CCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCEEEE
DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPE
CCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEEEEECCCCCCH
FFSAQEQEWMSQAGILGSDRSNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESK
HHCHHHHHHHHHCCCCCCCCCCCCCHHEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
STKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVEFSRYIAYPSVPPNLPTAEKL
CCEEEEEEEECCCHHHHHHCCCCCHHHHCCCCCEEEEEEEEEHEEECCCCCCCCCCHHHC
NVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH
EEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGD
CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCC
ADYISGQELGTLLQQSGLRDGNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRV
CCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHC
PAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGRAAMGVDGNQWYRPVLYLRWQ
CCEEEEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCEECEEEEEEEE
DNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV
CCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCEEEE
DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA