| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477767
Identifier: 113477767
GI number: 113477767
Start: 6725215
End: 6726819
Strand: Reverse
Name: 113477767
Synonym: Tery_4363
Alternate gene names: NA
Gene position: 6726819-6725215 (Counterclockwise)
Preceding gene: 113477768
Following gene: 113477766
Centisome position: 86.8
GC content: 41.5
Gene sequence:
>1605_bases ATGGAACTTTTGGAGTTATACCTGTCACCCCTTGATGACTCTACTAAATTTGAGGTTATTGTGACTGACTCTCCTGCGGG ACAGGGAAGGAATGAGTCATTGTTGCCTTTTTTGGATGCTGAATGGGACTGGCGCATTACTGTGATTAGAAGTTTGGAGG TTTCTACTTTCCGTCCTGAGTTTTTTTCTGCACAGGAACAGGAATGGATGAGCCAAGCGGGTATTTTAGGAAGCGATCGC TCAAATTTCCATCCTAATTATTTGATCAATATCGGTAAAGCTCTTTACTCTTCTCTGTTTCCTCCAGGTAGTAAGGTAGA AAATTTATTGCAGAAGTCTATTAGTTTTGCTGAATCTAAATCTACTAAACTGTTGGTGCGGTTGAAACTTGACGGGGATG TGGCCCAGAAAACGCGACTGGCAGATTATCCTTGGGAACTTTTGCACAACCAAGGCTTTCTCTGTCATTACCAAGTTGAG TTTTCTCGGTATATTGCCTATCCATCTGTTCCTCCTAACTTACCCACAGCGGAAAAACTGAATGTTTTATTGGTATCCTC CGCCGCATCTGATCATAAACTTAATCTCCAACCTCTGTCCCGCAAGGAACAAAAGGCTGTTCTTAAGGGGTTGGAAAAAG CTAGAGATCGAGGGGATATTTTTTTGGCACAACTGGAAGAACCTACTTTGGATGAGTTAAGAAATTATCTGACAGAACAT CGGGGGGATAAGGGACCCCATGTGATCCATTTTGATGGACATGGTTTGTTTGGCCAACGTTGTCCTAATTCTGAATGTGG GGCGATGAATGGGGGGACAAAATCTCGACGATGCCGTAAGTGTGAGACAGAGTTGCCTTTGCCTCAGGGATATCTGGTTT TTGAGGATAAGGATGGAGATGCTGATTATATTAGTGGTCAAGAATTGGGTACTCTGCTGCAACAGTCTGGTTTGAGGGAT GGTAATGGTAAAACAGAGGGTGTGGTTTTGGTGGTGTTGAGTGCTTGTCAGTCGGGAATGGCTATAGTGGGAGAGTCTGT GTTTAATGGTGCTGCTCAAAGTCTGATTGCTCATCGGGTGCCGGCGGTGGTGGCCATGCAATATTCTGTGAGGGTAGACA GTGCAACTAAGTTTGCTGAACAATTTTATCGTTCTCTGGGACAGAAAAATTCTCTAGCGGTGGCTGTTAGTCAGGGGCGG GCAGCCATGGGTGTGGATGGAAATCAGTGGTATCGTCCCGTGCTTTATTTGCGCTGGCAGGATAATGAGGGGGGCCAATT GTTTGTTACTCAATCTACGATAAAAAGTATAAATAAGAGTGTAAATAAGCCAATTCCGAGCAATCATCCACCAATTATAG AGGATCAAATAAAATTAAGTTTGAGAGCAATTCCCAATCAAAACATTAATAACATTAATTCGCCAGAAATCTTAGTAGTT GATACTGTAGTTGATACTTTAGCAACATTATCAGAATTAAAAGCTGGACTCTATAAGCTCTATAAAAAGTGCAAAGAACC AAAAATTTTAGAAGAAATAGAAAAAATAGAACATTTAGAGTTTAATCAAAAAAAGTTATTACAATCAGAGTTATACAGTA GATAA
Upstream 100 bases:
>100_bases AATAATTTCGCGAAATTACTGAGGGGGTAAAAGTTTTGATCTATTAAAATCTCACTTTTAACTTTTAACTTTTAACTTTT GACTTTTGACTTTTAGAGCT
Downstream 100 bases:
>100_bases AATTAAAATGCCAGAACCACTAACATTAGAACTATATAGAAAAATAGGGATTGCATACCATTCGCTAGGAAAATTTGAAC GCTCCATTGAATATTTTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: Chase2 Sensor Protein
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPEFFSAQEQEWMSQAGILGSDR SNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESKSTKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVE FSRYIAYPSVPPNLPTAEKLNVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGDADYISGQELGTLLQQSGLRD GNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRVPAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGR AAMGVDGNQWYRPVLYLRWQDNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR
Sequences:
>Translated_534_residues MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPEFFSAQEQEWMSQAGILGSDR SNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESKSTKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVE FSRYIAYPSVPPNLPTAEKLNVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGDADYISGQELGTLLQQSGLRD GNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRVPAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGR AAMGVDGNQWYRPVLYLRWQDNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR >Mature_534_residues MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPEFFSAQEQEWMSQAGILGSDR SNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESKSTKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVE FSRYIAYPSVPPNLPTAEKLNVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGDADYISGQELGTLLQQSGLRD GNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRVPAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGR AAMGVDGNQWYRPVLYLRWQDNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59723; Mature: 59723
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPE CCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEEEEECCCCCCH FFSAQEQEWMSQAGILGSDRSNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESK HHCHHHHHHHHHCCCCCCCCCCCCCHHEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC STKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVEFSRYIAYPSVPPNLPTAEKL CCEEEEEEEECCCHHHHHHCCCCCHHHHCCCCCEEEEEEEEEHEEECCCCCCCCCCHHHC NVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH EEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGD CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCC ADYISGQELGTLLQQSGLRDGNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRV CCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHC PAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGRAAMGVDGNQWYRPVLYLRWQ CCEEEEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCEECEEEEEEEE DNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV CCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCEEEE DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure MELLELYLSPLDDSTKFEVIVTDSPAGQGRNESLLPFLDAEWDWRITVIRSLEVSTFRPE CCCHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCEEEEEEEEEECCCCCCH FFSAQEQEWMSQAGILGSDRSNFHPNYLINIGKALYSSLFPPGSKVENLLQKSISFAESK HHCHHHHHHHHHCCCCCCCCCCCCCHHEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC STKLLVRLKLDGDVAQKTRLADYPWELLHNQGFLCHYQVEFSRYIAYPSVPPNLPTAEKL CCEEEEEEEECCCHHHHHHCCCCCHHHHCCCCCEEEEEEEEEHEEECCCCCCCCCCHHHC NVLLVSSAASDHKLNLQPLSRKEQKAVLKGLEKARDRGDIFLAQLEEPTLDELRNYLTEH EEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH RGDKGPHVIHFDGHGLFGQRCPNSECGAMNGGTKSRRCRKCETELPLPQGYLVFEDKDGD CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCC ADYISGQELGTLLQQSGLRDGNGKTEGVVLVVLSACQSGMAIVGESVFNGAAQSLIAHRV CCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHC PAVVAMQYSVRVDSATKFAEQFYRSLGQKNSLAVAVSQGRAAMGVDGNQWYRPVLYLRWQ CCEEEEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCEECEEEEEEEE DNEGGQLFVTQSTIKSINKSVNKPIPSNHPPIIEDQIKLSLRAIPNQNINNINSPEILVV CCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCEEEE DTVVDTLATLSELKAGLYKLYKKCKEPKILEEIEKIEHLEFNQKKLLQSELYSR HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA