Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477627

Identifier: 113477627

GI number: 113477627

Start: 6499151

End: 6499837

Strand: Reverse

Name: 113477627

Synonym: Tery_4214

Alternate gene names: NA

Gene position: 6499837-6499151 (Counterclockwise)

Preceding gene: 113477628

Following gene: 113477624

Centisome position: 83.87

GC content: 33.33

Gene sequence:

>687_bases
ATGGCACGAGGAGAACAAATATATACTATTAGAGAGTTTCTAAATATAGACGGTGTTTACGAACATCATGGCATTGACTA
TGGCGATGGAACAGTTATTCATTATCGCAAAGGAACAGAAACTATTGAACGAACTTCTAAAGCTTATTTTACTGATGGGA
GAAAAGTTTATGTTAAACGTTACCCACTTCGTTATATTGCTGATACAGTTATTCAAAGAGCAGAAAATAGATTAGGAGAA
AGAAAATATAATATTATTTTTAATAATTGTGAACACTTTGCAAGTTGGTGTATTACTGGAGTTAGTGATAGTCAACAAAT
AAAAAACTTTATTCCTCTACTGAATTATATTGATATTGAGCAAATATCTGAACAAGTTAAGGAAGCAATTTTCGGGGGAA
AAACTCAGGTCAATACTGACAAATTGGTAAGTCAAGCTTTGGCAGATATTAAAGTGGCTTGGGAAAATATTCAATCTGAA
TATAAACAGAATTTACAGGAAGTATATGACTGGCAAAATGTTGCAGTTGCAGCTCTCAGAAAAGAACGGGAAGATTTAGC
TTGTGCTGCTTTAATGCGAAAGCGAAAACATCAAGAACGTGCTGATGAATTAGCGGGTAGTTTGCAGAGGCTAGCAACTA
TAACAGAAAAACTTTTACGCAGCAAAAATTTAATTTGTAAATATTAG

Upstream 100 bases:

>100_bases
GTCCCACTAAATTGATCTAAAAATAGTGCTAATAATAAGAATCTACATCTATTGTTTATTTTTAGATTAAAGTGTAATGA
GATAAATTTAGGAAAATAAT

Downstream 100 bases:

>100_bases
TATTGCTGATCATAAATTATAGCAAAGATAGTAATACTAATTCTGGTTTAGAATATTAGCTCTATTGAAAGGGGACTTGA
CAGTTAAATAGAAATTAACT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKRYPLRYIADTVIQRAENRLGE
RKYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIEQISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSE
YKQNLQEVYDWQNVAVAALRKEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY

Sequences:

>Translated_228_residues
MARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKRYPLRYIADTVIQRAENRLGE
RKYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIEQISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSE
YKQNLQEVYDWQNVAVAALRKEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY
>Mature_227_residues
ARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKRYPLRYIADTVIQRAENRLGER
KYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIEQISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSEY
KQNLQEVYDWQNVAVAALRKEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26517; Mature: 26386

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKR
CCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEC
YPLRYIADTVIQRAENRLGERKYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIE
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
QISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSEYKQNLQEVYDWQNVAVAALR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ARGEQIYTIREFLNIDGVYEHHGIDYGDGTVIHYRKGTETIERTSKAYFTDGRKVYVKR
CCCHHHHHHHHHHCCCCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEC
YPLRYIADTVIQRAENRLGERKYNIIFNNCEHFASWCITGVSDSQQIKNFIPLLNYIDIE
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
QISEQVKEAIFGGKTQVNTDKLVSQALADIKVAWENIQSEYKQNLQEVYDWQNVAVAALR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEREDLACAALMRKRKHQERADELAGSLQRLATITEKLLRSKNLICKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA