| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is fur [H]
Identifier: 113476917
GI number: 113476917
Start: 5213167
End: 5213691
Strand: Reverse
Name: fur [H]
Synonym: Tery_3404
Alternate gene names: 113476917
Gene position: 5213691-5213167 (Counterclockwise)
Preceding gene: 113476922
Following gene: 113476913
Centisome position: 67.27
GC content: 34.1
Gene sequence:
>525_bases ATGGCATTTTATAATCATGATTCACTTAAGTCTGAACTAAATCAAAGAGGTTGGCGTTTAACTGCTCAAAGGGAAACTAT CCTGCAAGTGCTTCAACGTCTACCTCAAGGCAAACACTTAAGTGCAGAAGAAATATATAATCTGTTGTTAAATCAAAAGG AACAAATTAGTCTGTCTACTGTTTATCGAACACTACATTTATTGACAAAAGTAGGTATTCTCAGGGAACTAGAACTAGCC GAAGGACATAAACATTATGAGATGAGTGCCCCCAACCTTAATAAACATCACCATTTAGTTTGTCTTCAATGTCATAAAAC CTTTGAATTTAATGATGATTCCATAATGAAAATTAGTCAGAAGCAGGCTGAAAAAGAAGGTGTTGAAATGTTAGACTGTC AACTAACAATTCATGCTATTTGTATTGAGGCTTTACGCAAAGGTTGGCCTGCTTTAGTAGCTACTAATTGGTCTTGTCCA AGAACTAACTTAGAAATAACATCTAAATCAAATAATCACAAATAA
Upstream 100 bases:
>100_bases AAGTTATCAAACTCAGCCATAGATATTTTTGACTTTTGTATTTTAGACTCTTGTCTTCCTATATAAGTTGCTTAAGAAAT AAATCTGGATAATTTTAAAA
Downstream 100 bases:
>100_bases TCAAAAGGCAACTCTGGAGGAGGAGGGGGAGCTACCAAATATTCAAGAACTGCTTTATGACTCTCGCGGTTAGTTTGAAC TTCTGCAGCGATCGCCTCAA
Product: ferric uptake regulator family protein
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MAFYNHDSLKSELNQRGWRLTAQRETILQVLQRLPQGKHLSAEEIYNLLLNQKEQISLSTVYRTLHLLTKVGILRELELA EGHKHYEMSAPNLNKHHHLVCLQCHKTFEFNDDSIMKISQKQAEKEGVEMLDCQLTIHAICIEALRKGWPALVATNWSCP RTNLEITSKSNNHK
Sequences:
>Translated_174_residues MAFYNHDSLKSELNQRGWRLTAQRETILQVLQRLPQGKHLSAEEIYNLLLNQKEQISLSTVYRTLHLLTKVGILRELELA EGHKHYEMSAPNLNKHHHLVCLQCHKTFEFNDDSIMKISQKQAEKEGVEMLDCQLTIHAICIEALRKGWPALVATNWSCP RTNLEITSKSNNHK >Mature_173_residues AFYNHDSLKSELNQRGWRLTAQRETILQVLQRLPQGKHLSAEEIYNLLLNQKEQISLSTVYRTLHLLTKVGILRELELAE GHKHYEMSAPNLNKHHHLVCLQCHKTFEFNDDSIMKISQKQAEKEGVEMLDCQLTIHAICIEALRKGWPALVATNWSCPR TNLEITSKSNNHK
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=134, Percent_Identity=35.0746268656716, Blast_Score=84, Evalue=3e-18,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 20163; Mature: 20032
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFYNHDSLKSELNQRGWRLTAQRETILQVLQRLPQGKHLSAEEIYNLLLNQKEQISLST CCCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHH VYRTLHLLTKVGILRELELAEGHKHYEMSAPNLNKHHHLVCLQCHKTFEFNDDSIMKISQ HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHH KQAEKEGVEMLDCQLTIHAICIEALRKGWPALVATNWSCPRTNLEITSKSNNHK HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCCC >Mature Secondary Structure AFYNHDSLKSELNQRGWRLTAQRETILQVLQRLPQGKHLSAEEIYNLLLNQKEQISLST CCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHH VYRTLHLLTKVGILRELELAEGHKHYEMSAPNLNKHHHLVCLQCHKTFEFNDDSIMKISQ HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHH KQAEKEGVEMLDCQLTIHAICIEALRKGWPALVATNWSCPRTNLEITSKSNNHK HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]