| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476797
Identifier: 113476797
GI number: 113476797
Start: 5020859
End: 5022115
Strand: Reverse
Name: 113476797
Synonym: Tery_3273
Alternate gene names: NA
Gene position: 5022115-5020859 (Counterclockwise)
Preceding gene: 113476798
Following gene: 113476795
Centisome position: 64.8
GC content: 37.87
Gene sequence:
>1257_bases ATGGTTTCTACTACAAGTGCTAGTTTAAGAAATTATGCCCTAGTAACTCTTGCCTACTGGGGTTTCACCATTACTGATGG TGCTTTGCGAATGTTGGTGCTACTTTACTTCTACAAAATTGGTTATACTCCTCTAGAAATAGCCTTTTTATTCTTATTCT ATGAAGTTTTTGGCATCTTTACTAATTTTTTCGGTGGTTGGATAGGTTCACAACTTGGATTAAGAGTGACTCTGTACAGT GGTATTGGGTTACAGATTTTTGCCCTAATTATGCTTTCATGGGTAAACCTAGGTTGGGTACAGTGGTTAGCTGTGTTTTA TGTAATGGTAGCACAGGCATTTTCTGGAATTGCTAAAGATTTAACTAAAATGAGCTCTAAAAGTGCTATTAGGTTAGTTG TACCCCAAGATGCTCAGTCCTCTCTATTTAAGTGGGTAGCTGTGTTAACTGGTTCCAAGAATGCTCTTAAAGGGGCTGGT TTTTTTGTAGGTAGTGCGCTACTGTCATTATTTGGATTTGTCAATGCTCTGTGGATAATGGCGGGAGGACTATTTTTGAT TATGTTAACTGGCTTAATTCTACCAAAAAACATGGGCAAAATTAAGAGGAAGGTCAAGTTTAAAGAACTTTTTTCTAAAA GTCAGGAAATTAATATTCTTTCTGGTGCTCGCTTCTTTTTATTTGGTTCGCGAGATGTCTGGTTTGTAGTAGGGTTACCT GTTTTTCTGCAAGGTACTTTGGGTTGGTCTTTTTATGAAGTTGGTGGTTTTATGGCTTGTTGGGTCATAGGTTATGGTAT TATTCAATCTTTAGCACCGACTCTTATACAGAAATTTGGTTCTGGTAAGCCTCCACAATCAAAAACTATCCAATTTTGGA CGTTTACATTGACTGCTGTTCCTTGCGTGATCGCTCTGGCATTACAATTAGGTTTACCTGCTAATTTGGTAGTTGTTGGT GGTTTAATGTTGTTTGGTATAGTATTTGCTTTTAATTCTGCTGTTCATTCCTACCTGGTATTGGCATTTACTGATGATGA CAAAGTAGCTCTAAATGTTGGTTTCTACTATATGGCTAATTCCGGTGGTCGTCTTGCAGGTACAGTTTTATCGGGGTTAG TTTATCAAATATTTGGTTTGGTTGGTTGTCTGTGGGTATCCATGTTATTTGTATTAGGAGCAGCTTTAGTTTCTCTAAAG TTACCGGAGGCTAAACCTAGTAAAGCTATAGCTTGGCAAGCTGGGTCTGGAGATTAA
Upstream 100 bases:
>100_bases AGTTGGAAATCTGGTTTGAGTTTCTAATGATTTAGATCTCTTCAGAATTGAAGGTTTAATTTTAGGAAATTGGTTGCAAT AGTTTAAATTCATTAAAATT
Downstream 100 bases:
>100_bases TTTATCTATGGTTGAATATTTGGAGGCTGAATATCTACGAGAAGGTAAAGAAAGTGACCAGTTTAGATTTGTTACTATCT AGAATAACTTTATAGTAGTT
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Multidrug-Efflux Transporter; Membrane Transporter; Facilitator Superfamily Transporter; Multidrug Efflux Transporter MFS Family; Multidrug-Efflux Transporter; Nonfunctional Facilitator Superfamily Protein; MFS Transporter; Transporter-Like Protein; Permease Of Facilitator Superfamily; Nitric Oxide Reductase Cytochrome B Subunit
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MVSTTSASLRNYALVTLAYWGFTITDGALRMLVLLYFYKIGYTPLEIAFLFLFYEVFGIFTNFFGGWIGSQLGLRVTLYS GIGLQIFALIMLSWVNLGWVQWLAVFYVMVAQAFSGIAKDLTKMSSKSAIRLVVPQDAQSSLFKWVAVLTGSKNALKGAG FFVGSALLSLFGFVNALWIMAGGLFLIMLTGLILPKNMGKIKRKVKFKELFSKSQEINILSGARFFLFGSRDVWFVVGLP VFLQGTLGWSFYEVGGFMACWVIGYGIIQSLAPTLIQKFGSGKPPQSKTIQFWTFTLTAVPCVIALALQLGLPANLVVVG GLMLFGIVFAFNSAVHSYLVLAFTDDDKVALNVGFYYMANSGGRLAGTVLSGLVYQIFGLVGCLWVSMLFVLGAALVSLK LPEAKPSKAIAWQAGSGD
Sequences:
>Translated_418_residues MVSTTSASLRNYALVTLAYWGFTITDGALRMLVLLYFYKIGYTPLEIAFLFLFYEVFGIFTNFFGGWIGSQLGLRVTLYS GIGLQIFALIMLSWVNLGWVQWLAVFYVMVAQAFSGIAKDLTKMSSKSAIRLVVPQDAQSSLFKWVAVLTGSKNALKGAG FFVGSALLSLFGFVNALWIMAGGLFLIMLTGLILPKNMGKIKRKVKFKELFSKSQEINILSGARFFLFGSRDVWFVVGLP VFLQGTLGWSFYEVGGFMACWVIGYGIIQSLAPTLIQKFGSGKPPQSKTIQFWTFTLTAVPCVIALALQLGLPANLVVVG GLMLFGIVFAFNSAVHSYLVLAFTDDDKVALNVGFYYMANSGGRLAGTVLSGLVYQIFGLVGCLWVSMLFVLGAALVSLK LPEAKPSKAIAWQAGSGD >Mature_418_residues MVSTTSASLRNYALVTLAYWGFTITDGALRMLVLLYFYKIGYTPLEIAFLFLFYEVFGIFTNFFGGWIGSQLGLRVTLYS GIGLQIFALIMLSWVNLGWVQWLAVFYVMVAQAFSGIAKDLTKMSSKSAIRLVVPQDAQSSLFKWVAVLTGSKNALKGAG FFVGSALLSLFGFVNALWIMAGGLFLIMLTGLILPKNMGKIKRKVKFKELFSKSQEINILSGARFFLFGSRDVWFVVGLP VFLQGTLGWSFYEVGGFMACWVIGYGIIQSLAPTLIQKFGSGKPPQSKTIQFWTFTLTAVPCVIALALQLGLPANLVVVG GLMLFGIVFAFNSAVHSYLVLAFTDDDKVALNVGFYYMANSGGRLAGTVLSGLVYQIFGLVGCLWVSMLFVLGAALVSLK LPEAKPSKAIAWQAGSGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45545; Mature: 45545
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSTTSASLRNYALVTLAYWGFTITDGALRMLVLLYFYKIGYTPLEIAFLFLFYEVFGIF CCCCCCHHHHHHHEEEHHHHCCEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH TNFFGGWIGSQLGLRVTLYSGIGLQIFALIMLSWVNLGWVQWLAVFYVMVAQAFSGIAKD HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTKMSSKSAIRLVVPQDAQSSLFKWVAVLTGSKNALKGAGFFVGSALLSLFGFVNALWIM HHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AGGLFLIMLTGLILPKNMGKIKRKVKFKELFSKSQEINILSGARFFLFGSRDVWFVVGLP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEEEECHH VFLQGTLGWSFYEVGGFMACWVIGYGIIQSLAPTLIQKFGSGKPPQSKTIQFWTFTLTAV HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHH PCVIALALQLGLPANLVVVGGLMLFGIVFAFNSAVHSYLVLAFTDDDKVALNVGFYYMAN HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEEEEEC SGGRLAGTVLSGLVYQIFGLVGCLWVSMLFVLGAALVSLKLPEAKPSKAIAWQAGSGD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC >Mature Secondary Structure MVSTTSASLRNYALVTLAYWGFTITDGALRMLVLLYFYKIGYTPLEIAFLFLFYEVFGIF CCCCCCHHHHHHHEEEHHHHCCEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH TNFFGGWIGSQLGLRVTLYSGIGLQIFALIMLSWVNLGWVQWLAVFYVMVAQAFSGIAKD HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTKMSSKSAIRLVVPQDAQSSLFKWVAVLTGSKNALKGAGFFVGSALLSLFGFVNALWIM HHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AGGLFLIMLTGLILPKNMGKIKRKVKFKELFSKSQEINILSGARFFLFGSRDVWFVVGLP HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEEEECHH VFLQGTLGWSFYEVGGFMACWVIGYGIIQSLAPTLIQKFGSGKPPQSKTIQFWTFTLTAV HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHH PCVIALALQLGLPANLVVVGGLMLFGIVFAFNSAVHSYLVLAFTDDDKVALNVGFYYMAN HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEEEEEC SGGRLAGTVLSGLVYQIFGLVGCLWVSMLFVLGAALVSLKLPEAKPSKAIAWQAGSGD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA