| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476784
Identifier: 113476784
GI number: 113476784
Start: 4997785
End: 4998891
Strand: Reverse
Name: 113476784
Synonym: Tery_3259
Alternate gene names: NA
Gene position: 4998891-4997785 (Counterclockwise)
Preceding gene: 113476785
Following gene: 113476780
Centisome position: 64.5
GC content: 42.37
Gene sequence:
>1107_bases ATGCGACGAGGACAATTTAAATCTCTAATTCCATTATTAAGCGGGGTAACTTTAGTAGGTATCTTAGCCAGACCCGTAAG TCCTGTTATCCCCGGTGTTAACTTTCTGATGATTCTGAGTCCACCAGGGCAGGTCAAACTCAAACGTCCCCATTGGCAAA AATATCAGCCAATAATAATAGGAACTCCCCTGAGAAATGAAGACCGCTTACTCCTCCCCAAGGGAGCCCAAGCTGAAGTA CTGTGTCAGAATTTGACGGAATGGAAAGTTCCCGATGGCAGAGAATCTATTGTTAGTGAAGGGTGTCCCCCTGTGAGTAA CCCCAAACTGAGGGAGCTAGGTAAGGTTACTGCAGATAGCCGGGCTATCAACGATCCCAAAATTCCCTATATTCTCAGTC CCAGGAATACAAAATTGTTGCCTACTCAGTCCTTAACTTTGCGATGGAACCAGGTTGAGGGAGCTAAAAATTATCGCGTG GAGCTGGTAGGTCCAGGTGTGAATTTGAATCAGGAAACAAGGGAAAACCAGCTAGTTTATACAGCGAAGCCACCCTTGAA ACGGGGAGTTCGTTACTGGTTCAATGTGGTAACGGATAAAAATAAAACTTCAACATTTGAGGGAACTCCTGGATTTACTA TTCTTTCAGAGAAAGAAGTCAAAGAGACATTGGGTGCAGTTGAAGAAATCAAGCAGAAGCAACTGAGTCGGGAAGCTCAA GCACTCGCTATCGCCCGCTTGTATCAAAGTAAAGAACTGTATAACGAAGCCATCAAACCGCTGGAAACTGCAATTCAAGA TGGTATTAAATCTACAGCCATCTATCAACTCTTAGGAGAAATTCATCAAAAAATTGGATTAAATAGATTAGCACGCCTAT ACTACCTAAAAGCTCTGAAGCTAACCAAACCTGAAGCAGATTTGGAAGGTTTAGCAAATATCCAGGGGGGATTAGCTATC ACCAATGCAATTATAAGATATAAGGATGATGCACTGAAGTATTTGGAATATGCCAAAGCTAGCTATAAGAAGCTTGAGCG GAAGAAAGAGCAGGAAAAAACAGTTCGTAAACTAGAAGCAGAAGTAAGCCGTATTTTAGGAATATGA
Upstream 100 bases:
>100_bases AACAATGGCAGAAATGCTGTCAGTTAGGTTCCGTATTCAACCCAGATGAAAGTAAATGGCTCAGTTCAGCCCATAAAAAA TTAAAGGAGGCAGGAAAATC
Downstream 100 bases:
>100_bases GAGTAGAGGAGTGGAGAAGTAGGGGAATAGGGAATAGATGATCAAATTAATTCACTACACTGCAAATTCTGTGTGCATAG CAACTTCTTGCAGATAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MRRGQFKSLIPLLSGVTLVGILARPVSPVIPGVNFLMILSPPGQVKLKRPHWQKYQPIIIGTPLRNEDRLLLPKGAQAEV LCQNLTEWKVPDGRESIVSEGCPPVSNPKLRELGKVTADSRAINDPKIPYILSPRNTKLLPTQSLTLRWNQVEGAKNYRV ELVGPGVNLNQETRENQLVYTAKPPLKRGVRYWFNVVTDKNKTSTFEGTPGFTILSEKEVKETLGAVEEIKQKQLSREAQ ALAIARLYQSKELYNEAIKPLETAIQDGIKSTAIYQLLGEIHQKIGLNRLARLYYLKALKLTKPEADLEGLANIQGGLAI TNAIIRYKDDALKYLEYAKASYKKLERKKEQEKTVRKLEAEVSRILGI
Sequences:
>Translated_368_residues MRRGQFKSLIPLLSGVTLVGILARPVSPVIPGVNFLMILSPPGQVKLKRPHWQKYQPIIIGTPLRNEDRLLLPKGAQAEV LCQNLTEWKVPDGRESIVSEGCPPVSNPKLRELGKVTADSRAINDPKIPYILSPRNTKLLPTQSLTLRWNQVEGAKNYRV ELVGPGVNLNQETRENQLVYTAKPPLKRGVRYWFNVVTDKNKTSTFEGTPGFTILSEKEVKETLGAVEEIKQKQLSREAQ ALAIARLYQSKELYNEAIKPLETAIQDGIKSTAIYQLLGEIHQKIGLNRLARLYYLKALKLTKPEADLEGLANIQGGLAI TNAIIRYKDDALKYLEYAKASYKKLERKKEQEKTVRKLEAEVSRILGI >Mature_368_residues MRRGQFKSLIPLLSGVTLVGILARPVSPVIPGVNFLMILSPPGQVKLKRPHWQKYQPIIIGTPLRNEDRLLLPKGAQAEV LCQNLTEWKVPDGRESIVSEGCPPVSNPKLRELGKVTADSRAINDPKIPYILSPRNTKLLPTQSLTLRWNQVEGAKNYRV ELVGPGVNLNQETRENQLVYTAKPPLKRGVRYWFNVVTDKNKTSTFEGTPGFTILSEKEVKETLGAVEEIKQKQLSREAQ ALAIARLYQSKELYNEAIKPLETAIQDGIKSTAIYQLLGEIHQKIGLNRLARLYYLKALKLTKPEADLEGLANIQGGLAI TNAIIRYKDDALKYLEYAKASYKKLERKKEQEKTVRKLEAEVSRILGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41393; Mature: 41393
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRGQFKSLIPLLSGVTLVGILARPVSPVIPGVNFLMILSPPGQVKLKRPHWQKYQPIII CCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCEEEECCCCCCCCCEEE GTPLRNEDRLLLPKGAQAEVLCQNLTEWKVPDGRESIVSEGCPPVSNPKLRELGKVTADS ECCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCC RAINDPKIPYILSPRNTKLLPTQSLTLRWNQVEGAKNYRVELVGPGVNLNQETRENQLVY CCCCCCCCCEEECCCCCEECCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEE TAKPPLKRGVRYWFNVVTDKNKTSTFEGTPGFTILSEKEVKETLGAVEEIKQKQLSREAQ ECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH ALAIARLYQSKELYNEAIKPLETAIQDGIKSTAIYQLLGEIHQKIGLNRLARLYYLKALK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTKPEADLEGLANIQGGLAITNAIIRYKDDALKYLEYAKASYKKLERKKEQEKTVRKLEA CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVSRILGI HHHHHHCC >Mature Secondary Structure MRRGQFKSLIPLLSGVTLVGILARPVSPVIPGVNFLMILSPPGQVKLKRPHWQKYQPIII CCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCEEEECCCCCCCCCEEE GTPLRNEDRLLLPKGAQAEVLCQNLTEWKVPDGRESIVSEGCPPVSNPKLRELGKVTADS ECCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHCCCC RAINDPKIPYILSPRNTKLLPTQSLTLRWNQVEGAKNYRVELVGPGVNLNQETRENQLVY CCCCCCCCCEEECCCCCEECCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCEEE TAKPPLKRGVRYWFNVVTDKNKTSTFEGTPGFTILSEKEVKETLGAVEEIKQKQLSREAQ ECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH ALAIARLYQSKELYNEAIKPLETAIQDGIKSTAIYQLLGEIHQKIGLNRLARLYYLKALK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTKPEADLEGLANIQGGLAITNAIIRYKDDALKYLEYAKASYKKLERKKEQEKTVRKLEA CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EVSRILGI HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA