| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476761
Identifier: 113476761
GI number: 113476761
Start: 4947996
End: 4949144
Strand: Reverse
Name: 113476761
Synonym: Tery_3232
Alternate gene names: NA
Gene position: 4949144-4947996 (Counterclockwise)
Preceding gene: 113476763
Following gene: 113476760
Centisome position: 63.86
GC content: 32.99
Gene sequence:
>1149_bases ATGAAATTTATTAGCCCTAAAACCGACTTTGCTTTTAAAAAAATATTTGGTTCTATTCACAGTCAAAATATTCTCATTAG CTTTCTTAATGCTATAGTTTATAATAATCAGAATATTATTCAATCTCTAGAAATAATTAATCCTTATAATCCTGGAGTTA CGAACACTATTAAAGAGACTTATTTAGATGTAAAAGCAGTTTTAGATAATGGTTCTACTGTGATTATTGAAATGCAAGTA TTAAACGTAGAAGATTTTGAAAAACGAGTAATTTATAATCTAGCTAAAGCTTATGGAAATCAATTAGAGGTAGGGCAAGG TTATATGATGTTGACACCTTTTGTAGCTTTAACAATCGCCGATTTTGTTTTATTTGAAAACACAGATAAAATGATTACTA AATTCCGATTTAAAGAAGAGACGGAGTTGTTTAATTACCAAGATGAATTAACTTTAATGTTTGTAGAATTACCCAAATTT AAGAAAGAATTGTCAGTATTAGAAACCCTCAGTGATAAGTGGATATATTTTATTAGCTCGGCTCCAAATTTAGAAGTAAT ACCTTCCTCTTTAGAAGAGGTATCAGAAATAGAGTCAGCATTAAATATAGCAAATATGGCTAACTTAAGTAATGAAGAAT TAGAGGAATTAGAGCAACAAGAAAAGTTGATTAGAGATAAGAAAGGACAAATTAGTTTAGCCAGAAAGGAAGGTATAGAA ATTGGGCGTGAGGAAGGTATTGGAATTGGAAGAGAAGAAGGTATTGGAATTGGAAGAGAAGAAGGTATTGGAATTGGACG GGAGGAAGGCATTGGAATTGGAAGAGAAGAAGGTATTGGAATTGGAAGAGAAGAAGGTATTGGAATTGGACGGGAGGAAG GCATTGGAATTGGAAGAGAAGAAGGTATTGGAATTGGAAGAGAAGAAGGTATTGGAATTGGACGGGAGGAAGGCATTGGA ATTGGAAGAGAGGAAGGAATGAGAATATTAGTTAAACGTCAAATTCGCCGGAAGTTTGGGGAAGTGCCTCCAGAAGTTCA GACTCAGATAGAGCAATTATCTTTGGAAAAGTTAGATATTTTAGGTGATGAAATTTTTGATTTAGCAATAATAGCAGACT TAGAAAACTGGCTAGCTAATAATGGATGA
Upstream 100 bases:
>100_bases ACCAATTCCAAATCCCAATTAAATCCTAAGCGATCGCTTTTTAATTATAATGAAATAGTGTAAAATAAATTATACTAGTT CAGCAAAATAATAGATAACT
Downstream 100 bases:
>100_bases TTGATAATGAATAATTGATAATTAAAGAGTCTTTTTTTTCTCTATTTTTCTATATAATTCTCGGAAAAAGTGTCGATCGC TTTTTAATTATGATGAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MKFISPKTDFAFKKIFGSIHSQNILISFLNAIVYNNQNIIQSLEIINPYNPGVTNTIKETYLDVKAVLDNGSTVIIEMQV LNVEDFEKRVIYNLAKAYGNQLEVGQGYMMLTPFVALTIADFVLFENTDKMITKFRFKEETELFNYQDELTLMFVELPKF KKELSVLETLSDKWIYFISSAPNLEVIPSSLEEVSEIESALNIANMANLSNEELEELEQQEKLIRDKKGQISLARKEGIE IGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIG IGREEGMRILVKRQIRRKFGEVPPEVQTQIEQLSLEKLDILGDEIFDLAIIADLENWLANNG
Sequences:
>Translated_382_residues MKFISPKTDFAFKKIFGSIHSQNILISFLNAIVYNNQNIIQSLEIINPYNPGVTNTIKETYLDVKAVLDNGSTVIIEMQV LNVEDFEKRVIYNLAKAYGNQLEVGQGYMMLTPFVALTIADFVLFENTDKMITKFRFKEETELFNYQDELTLMFVELPKF KKELSVLETLSDKWIYFISSAPNLEVIPSSLEEVSEIESALNIANMANLSNEELEELEQQEKLIRDKKGQISLARKEGIE IGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIG IGREEGMRILVKRQIRRKFGEVPPEVQTQIEQLSLEKLDILGDEIFDLAIIADLENWLANNG >Mature_382_residues MKFISPKTDFAFKKIFGSIHSQNILISFLNAIVYNNQNIIQSLEIINPYNPGVTNTIKETYLDVKAVLDNGSTVIIEMQV LNVEDFEKRVIYNLAKAYGNQLEVGQGYMMLTPFVALTIADFVLFENTDKMITKFRFKEETELFNYQDELTLMFVELPKF KKELSVLETLSDKWIYFISSAPNLEVIPSSLEEVSEIESALNIANMANLSNEELEELEQQEKLIRDKKGQISLARKEGIE IGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIG IGREEGMRILVKRQIRRKFGEVPPEVQTQIEQLSLEKLDILGDEIFDLAIIADLENWLANNG
Specific function: Unknown
COG id: COG5464
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42779; Mature: 42779
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFISPKTDFAFKKIFGSIHSQNILISFLNAIVYNNQNIIQSLEIINPYNPGVTNTIKET CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHH YLDVKAVLDNGSTVIIEMQVLNVEDFEKRVIYNLAKAYGNQLEVGQGYMMLTPFVALTIA HHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCEECCCCEEHHHHHHHHHHH DFVLFENTDKMITKFRFKEETELFNYQDELTLMFVELPKFKKELSVLETLSDKWIYFISS HHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEC APNLEVIPSSLEEVSEIESALNIANMANLSNEELEELEQQEKLIRDKKGQISLARKEGIE CCCCEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHCCC IGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGRE CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGIGIGREEGIGIGREEGIGIGREEGMRILVKRQIRRKFGEVPPEVQTQIEQLSLEKLDI CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LGDEIFDLAIIADLENWLANNG HHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MKFISPKTDFAFKKIFGSIHSQNILISFLNAIVYNNQNIIQSLEIINPYNPGVTNTIKET CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHHH YLDVKAVLDNGSTVIIEMQVLNVEDFEKRVIYNLAKAYGNQLEVGQGYMMLTPFVALTIA HHHHHHHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCEECCCCEEHHHHHHHHHHH DFVLFENTDKMITKFRFKEETELFNYQDELTLMFVELPKFKKELSVLETLSDKWIYFISS HHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCEEEEEEC APNLEVIPSSLEEVSEIESALNIANMANLSNEELEELEQQEKLIRDKKGQISLARKEGIE CCCCEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEHHHHCCC IGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGREEGIGIGRE CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EGIGIGREEGIGIGREEGIGIGREEGMRILVKRQIRRKFGEVPPEVQTQIEQLSLEKLDI CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LGDEIFDLAIIADLENWLANNG HHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA