| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476142
Identifier: 113476142
GI number: 113476142
Start: 3893600
End: 3894544
Strand: Direct
Name: 113476142
Synonym: Tery_2525
Alternate gene names: NA
Gene position: 3893600-3894544 (Clockwise)
Preceding gene: 113476141
Following gene: 113476144
Centisome position: 50.24
GC content: 37.14
Gene sequence:
>945_bases ATGTTATCTAACACCTGTTCACTCTCAATTTTGGTAGCAAGAACAGACATACCTTTTATGATGCATACAATTCCTCATCT AGTTAGAATGAGTAATTTTAATTTTATTCAAAGAGTGTTGTTTGTGGATACAGCACCTCTATCTGGAGATAAAGTTATGC GTCCTGGTGTTGGTAGTCTAAGTGAACTCAGAGATTGCTGCAGTGCACTCCAAAGTGAAGGTATTGTAGATCGAGTTGTG GATATTAACTATGACCAAACTTATCAACAACAAATGTACCTAAAGCATTTTGGTACTCCGATTAAGCCCACCCATAACTA TAAAGGTTATCCGATATTAGGGTCAATTTTTCACATAGAATCTGTACCAGGAAATTATGTGTTGCATTATGATAGTGATA TGCTTCTACATCAGCAAAAAGATTATAGTTGGGTAGACGAAGGTATCAAGCTAATGGAGGAACATCCGGAAATAATGGCC ATCAGACCATTAACTGGGCCACCAACTAAGGATGGTACTATGTACAAACAAAATAAGTCGCTAAAAACAGAACCAGGGGG ATTCTACAAATTCAAATTTTTCAGCAGTAGGGTGTATCTAATTAACCATAAACGCTTTGACAAGTTACTACCATTACCTA TTTTGTGGCGTTCTTACAAGAAAAAATTTCTTAATCGACTGCCACTAAGTCTAAAAAACCTCTTAAACTACTATACTGAC AAAGGCAAGCTGGATTCTTGGGAGGTTATGGTATCTATGCAATTAGAGAAAACTAATTATGTACGAGCAACTATGAGTTC CCCCAGGGCGTGGACTATTCATCCTAAAGACCGAAGTGCAGAATTTATCGGAGCTTTGCCAAATATTATCGAAAAAATAG AGGCAGGATACTACCCACTTGAGCAAGCTGGACACTATGACTTTATTTCAAAATATTGGCTTTGA
Upstream 100 bases:
>100_bases TTTCTAGTTTTTCAATTGTTAAGCCTAATGGGAGGATTGCTATATTTATAAGGAGATGTTCTCTGTGAATTCTATATGGC AGTTTTAATAAGAAAGCATA
Downstream 100 bases:
>100_bases GGGAACAAAGTTAACCGAAAATTTGAGTTTTTGCCGCGTTTTGCTAAGGGAACCTTATTTTATGTAACTTAAACGAAAAT AGAAATTTAGCTCCCCTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSLSELRDCCSALQSEGIVDRVV DINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIESVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMA IRPLTGPPTKDGTMYKQNKSLKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPLEQAGHYDFISKYWL
Sequences:
>Translated_314_residues MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSLSELRDCCSALQSEGIVDRVV DINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIESVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMA IRPLTGPPTKDGTMYKQNKSLKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPLEQAGHYDFISKYWL >Mature_314_residues MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSLSELRDCCSALQSEGIVDRVV DINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIESVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMA IRPLTGPPTKDGTMYKQNKSLKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPLEQAGHYDFISKYWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36480; Mature: 36480
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSL CCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCCCCCH SELRDCCSALQSEGIVDRVVDINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIE HHHHHHHHHHHHCCCEEHEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE SVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMAIRPLTGPPTKDGTMYKQNKS CCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCC LKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD CCCCCCCEEEEEEECCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPL CCCCCCEEEEEEEEECCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCH EQAGHYDFISKYWL HHCCCHHHHHHHCC >Mature Secondary Structure MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSL CCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCCCCCH SELRDCCSALQSEGIVDRVVDINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIE HHHHHHHHHHHHCCCEEHEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE SVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMAIRPLTGPPTKDGTMYKQNKS CCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCC LKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD CCCCCCCEEEEEEECCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPL CCCCCCEEEEEEEEECCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCH EQAGHYDFISKYWL HHCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA