Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113476142

Identifier: 113476142

GI number: 113476142

Start: 3893600

End: 3894544

Strand: Direct

Name: 113476142

Synonym: Tery_2525

Alternate gene names: NA

Gene position: 3893600-3894544 (Clockwise)

Preceding gene: 113476141

Following gene: 113476144

Centisome position: 50.24

GC content: 37.14

Gene sequence:

>945_bases
ATGTTATCTAACACCTGTTCACTCTCAATTTTGGTAGCAAGAACAGACATACCTTTTATGATGCATACAATTCCTCATCT
AGTTAGAATGAGTAATTTTAATTTTATTCAAAGAGTGTTGTTTGTGGATACAGCACCTCTATCTGGAGATAAAGTTATGC
GTCCTGGTGTTGGTAGTCTAAGTGAACTCAGAGATTGCTGCAGTGCACTCCAAAGTGAAGGTATTGTAGATCGAGTTGTG
GATATTAACTATGACCAAACTTATCAACAACAAATGTACCTAAAGCATTTTGGTACTCCGATTAAGCCCACCCATAACTA
TAAAGGTTATCCGATATTAGGGTCAATTTTTCACATAGAATCTGTACCAGGAAATTATGTGTTGCATTATGATAGTGATA
TGCTTCTACATCAGCAAAAAGATTATAGTTGGGTAGACGAAGGTATCAAGCTAATGGAGGAACATCCGGAAATAATGGCC
ATCAGACCATTAACTGGGCCACCAACTAAGGATGGTACTATGTACAAACAAAATAAGTCGCTAAAAACAGAACCAGGGGG
ATTCTACAAATTCAAATTTTTCAGCAGTAGGGTGTATCTAATTAACCATAAACGCTTTGACAAGTTACTACCATTACCTA
TTTTGTGGCGTTCTTACAAGAAAAAATTTCTTAATCGACTGCCACTAAGTCTAAAAAACCTCTTAAACTACTATACTGAC
AAAGGCAAGCTGGATTCTTGGGAGGTTATGGTATCTATGCAATTAGAGAAAACTAATTATGTACGAGCAACTATGAGTTC
CCCCAGGGCGTGGACTATTCATCCTAAAGACCGAAGTGCAGAATTTATCGGAGCTTTGCCAAATATTATCGAAAAAATAG
AGGCAGGATACTACCCACTTGAGCAAGCTGGACACTATGACTTTATTTCAAAATATTGGCTTTGA

Upstream 100 bases:

>100_bases
TTTCTAGTTTTTCAATTGTTAAGCCTAATGGGAGGATTGCTATATTTATAAGGAGATGTTCTCTGTGAATTCTATATGGC
AGTTTTAATAAGAAAGCATA

Downstream 100 bases:

>100_bases
GGGAACAAAGTTAACCGAAAATTTGAGTTTTTGCCGCGTTTTGCTAAGGGAACCTTATTTTATGTAACTTAAACGAAAAT
AGAAATTTAGCTCCCCTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSLSELRDCCSALQSEGIVDRVV
DINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIESVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMA
IRPLTGPPTKDGTMYKQNKSLKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD
KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPLEQAGHYDFISKYWL

Sequences:

>Translated_314_residues
MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSLSELRDCCSALQSEGIVDRVV
DINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIESVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMA
IRPLTGPPTKDGTMYKQNKSLKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD
KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPLEQAGHYDFISKYWL
>Mature_314_residues
MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSLSELRDCCSALQSEGIVDRVV
DINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIESVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMA
IRPLTGPPTKDGTMYKQNKSLKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD
KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPLEQAGHYDFISKYWL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36480; Mature: 36480

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSL
CCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCCCCCH
SELRDCCSALQSEGIVDRVVDINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIE
HHHHHHHHHHHHCCCEEHEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE
SVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMAIRPLTGPPTKDGTMYKQNKS
CCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCC
LKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD
CCCCCCCEEEEEEECCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC
KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPL
CCCCCCEEEEEEEEECCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCH
EQAGHYDFISKYWL
HHCCCHHHHHHHCC
>Mature Secondary Structure
MLSNTCSLSILVARTDIPFMMHTIPHLVRMSNFNFIQRVLFVDTAPLSGDKVMRPGVGSL
CCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCCCCCH
SELRDCCSALQSEGIVDRVVDINYDQTYQQQMYLKHFGTPIKPTHNYKGYPILGSIFHIE
HHHHHHHHHHHHCCCEEHEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEE
SVPGNYVLHYDSDMLLHQQKDYSWVDEGIKLMEEHPEIMAIRPLTGPPTKDGTMYKQNKS
CCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEECCCC
LKTEPGGFYKFKFFSSRVYLINHKRFDKLLPLPILWRSYKKKFLNRLPLSLKNLLNYYTD
CCCCCCCEEEEEEECCEEEEEECHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC
KGKLDSWEVMVSMQLEKTNYVRATMSSPRAWTIHPKDRSAEFIGALPNIIEKIEAGYYPL
CCCCCCEEEEEEEEECCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCH
EQAGHYDFISKYWL
HHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA