| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476090
Identifier: 113476090
GI number: 113476090
Start: 3796221
End: 3796706
Strand: Direct
Name: 113476090
Synonym: Tery_2468
Alternate gene names: NA
Gene position: 3796221-3796706 (Clockwise)
Preceding gene: 113476085
Following gene: 113476091
Centisome position: 48.98
GC content: 32.51
Gene sequence:
>486_bases ATGAATTATTCAAAGGATAAGTTCTTATTATCTACGTTATTAGCTATCGGAGAGTTAGAGAATTCTTTAGGTTCTGAGGC TAAAGATGCTCTCTATGTTATTGCTGAACAACTATTTGTTAAACCTACTGCTTGGGAAACAGATATTGAGTCTAATTTAA TGGGAATAATTAATGAAAATTCGTCTTTAAGTACAATCTTTCAGGACTTTAAATCTAAGTTAGATGAGGTTGATAATATT TATGATTTTATTCCCACTCAAGAAGAATTAGAAGCAGTTATTCCGGCGGCTGCTCTGAAACATACCCGTCCTATTATTAA GCCTAATTCTTCTGATCTAACAAGTGAAGAAGAAATTACTAATATGTCTATGCAGGTTTTATCATCGCCAGAGCCATCAG AAATAGCAAAAGAAATAGTAAAAAAATCTAGCAAGTTGGAGCGGCTATTAAATTTGATTCGTCCAAATAGGTCGAAGAAT AAATAA
Upstream 100 bases:
>100_bases GATATAGATATGTTAAAGTTCACAGAGGAAATTAATAAGTTCAATAACTAAAATTATCTGAAAATAAAAAAAAATAAGTT ATAAATAAAGGAGAATTTAG
Downstream 100 bases:
>100_bases TTTCTAATTATTATGGAAAGCAGAAGGTTCTCAGCAGGGGGTAAGAGTGTTAGAATGATTTGGAAAAACTAGCTTTTTAT GGATATGATTTGGTTTAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 161
Protein sequence:
>161_residues MNYSKDKFLLSTLLAIGELENSLGSEAKDALYVIAEQLFVKPTAWETDIESNLMGIINENSSLSTIFQDFKSKLDEVDNI YDFIPTQEELEAVIPAAALKHTRPIIKPNSSDLTSEEEITNMSMQVLSSPEPSEIAKEIVKKSSKLERLLNLIRPNRSKN K
Sequences:
>Translated_161_residues MNYSKDKFLLSTLLAIGELENSLGSEAKDALYVIAEQLFVKPTAWETDIESNLMGIINENSSLSTIFQDFKSKLDEVDNI YDFIPTQEELEAVIPAAALKHTRPIIKPNSSDLTSEEEITNMSMQVLSSPEPSEIAKEIVKKSSKLERLLNLIRPNRSKN K >Mature_161_residues MNYSKDKFLLSTLLAIGELENSLGSEAKDALYVIAEQLFVKPTAWETDIESNLMGIINENSSLSTIFQDFKSKLDEVDNI YDFIPTQEELEAVIPAAALKHTRPIIKPNSSDLTSEEEITNMSMQVLSSPEPSEIAKEIVKKSSKLERLLNLIRPNRSKN K
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18088; Mature: 18088
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYSKDKFLLSTLLAIGELENSLGSEAKDALYVIAEQLFVKPTAWETDIESNLMGIINEN CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC SSLSTIFQDFKSKLDEVDNIYDFIPTQEELEAVIPAAALKHTRPIIKPNSSDLTSEEEIT CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH NMSMQVLSSPEPSEIAKEIVKKSSKLERLLNLIRPNRSKNK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNYSKDKFLLSTLLAIGELENSLGSEAKDALYVIAEQLFVKPTAWETDIESNLMGIINEN CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC SSLSTIFQDFKSKLDEVDNIYDFIPTQEELEAVIPAAALKHTRPIIKPNSSDLTSEEEIT CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH NMSMQVLSSPEPSEIAKEIVKKSSKLERLLNLIRPNRSKNK HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA