Click here to switch to the map view.

The map label for this gene is yjfH [C]

Identifier: 113475949

GI number: 113475949

Start: 3584216

End: 3585082

Strand: Direct

Name: yjfH [C]

Synonym: Tery_2313

Alternate gene names: 113475949

Gene position: 3584216-3585082 (Clockwise)

Preceding gene: 113475948

Following gene: 113475953

Centisome position: 46.25

GC content: 37.83

Gene sequence:

>867_bases
ATGTCTACAAAAAATTATAAATTCAATTCTCAAGAAAAACCTCAAAAAAATAAACAAATTCAACTAAAAGATGGGCGATC
AAAAAAATATTATTCCCCAACTGTCAAAGAAGAAGATGAGGATCTAATCTACGGACGACACACTGTACAAGCTGCCCTCA
AAAGTGAGCGATATTTAAACCGCATCTGGATAATTTCTTCTCTGCGATATGATCCCCGGTTTCATATATTGCTGAACGAG
GCCAAAACGAAGGGTACAATTATAGATGAAGTAGATGACAGACGCCTAGATCAAATTACCCGGAGAAAACATCATCAGGG
TATAGTAGCTCAAATATGCCCTTATGAGTATAAGGAACTTCACGAATTAATTTCTCAAGCAAAATCGAAAACTGATCGCT
CTGTATTGCTTGTAGCTGATGGGATAAATGATCCCCATAACTTAGGAGCTATTATTCGCACTGGTGAAGCTCTTGGAATA
CAAGGTTTAGTTATTCCGCAAAGACGAGCAGTAGGAATAACTTCCACAGTGACAAAAGTTGCTGCAGGAGCCTTAGAAAA
TTTTCCTGTAGCTAGAGTTATTAATCTTAATAGTGCTTTGGAAGAATTAAAGAAAGAGGGTTTTTGGATATATGGTACTG
TCGCGAAGGACGGGGAACCTATCCATACAGTAAAATTCACTGGAGCTATTGTTTTAGTCGTTGGTAGCGAAGGAGAAGGT
TTAAGTCTTCTGATCCAAAAAAATTGTGACGCCTTAGTTTCTATACCAATGTCGGGAAGTACACCAAGTTTGAATGTATC
AGTCGCAACGGGTATGGCTATTTACGAAATTCATCGACAACACTGGTCAAAAAATTTACGTATTTAG

Upstream 100 bases:

>100_bases
CAAATTTGAAATAATTAATCTACAATTGTCTTTTACCTATAACATCTCCCAAAGGGATTCAATAAAAACTATAAGTAGTA
AAGCAAATTTGAAATAACTT

Downstream 100 bases:

>100_bases
CTAGAACTTTGACATAGGGAAGTCCTTGTAATATGCTACCTAATCAAATAATTATAATTAAATTTGCTAGTAGAATAGAA
ATTATAAGCATAGGGATCTT

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSTKNYKFNSQEKPQKNKQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAALKSERYLNRIWIISSLRYDPRFHILLNE
AKTKGTIIDEVDDRRLDQITRRKHHQGIVAQICPYEYKELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGI
QGLVIPQRRAVGITSTVTKVAAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAIVLVVGSEGEG
LSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQHWSKNLRI

Sequences:

>Translated_288_residues
MSTKNYKFNSQEKPQKNKQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAALKSERYLNRIWIISSLRYDPRFHILLNE
AKTKGTIIDEVDDRRLDQITRRKHHQGIVAQICPYEYKELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGI
QGLVIPQRRAVGITSTVTKVAAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAIVLVVGSEGEG
LSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQHWSKNLRI
>Mature_287_residues
STKNYKFNSQEKPQKNKQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAALKSERYLNRIWIISSLRYDPRFHILLNEA
KTKGTIIDEVDDRRLDQITRRKHHQGIVAQICPYEYKELHELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGIQ
GLVIPQRRAVGITSTVTKVAAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAIVLVVGSEGEGL
SLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQHWSKNLRI

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=220, Percent_Identity=30, Blast_Score=98, Evalue=8e-21,
Organism=Escherichia coli, GI1790623, Length=245, Percent_Identity=39.1836734693878, Blast_Score=183, Evalue=9e-48,
Organism=Escherichia coli, GI1788935, Length=258, Percent_Identity=27.1317829457364, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790083, Length=170, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=276, Percent_Identity=26.8115942028986, Blast_Score=78, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6324775, Length=288, Percent_Identity=26.7361111111111, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 32282; Mature: 32151

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTKNYKFNSQEKPQKNKQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAALKSERYLN
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHH
RIWIISSLRYDPRFHILLNEAKTKGTIIDEVDDRRLDQITRRKHHQGIVAQICPYEYKEL
EEEEEEECCCCCEEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHCCCEEHHCCCCHHHH
HELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGIQGLVIPQRRAVGITSTVTKV
HHHHHHHHCCCCCEEEEEECCCCCHHHCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHH
AAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAIVLVVGSEGEG
HHHHHHCCCEEEEEEHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCEEEEEECCCCCC
LSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQHWSKNLRI
EEEEEECCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
STKNYKFNSQEKPQKNKQIQLKDGRSKKYYSPTVKEEDEDLIYGRHTVQAALKSERYLN
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHH
RIWIISSLRYDPRFHILLNEAKTKGTIIDEVDDRRLDQITRRKHHQGIVAQICPYEYKEL
EEEEEEECCCCCEEEEEEECCCCCCCEECCCCHHHHHHHHHHHHHCCCEEHHCCCCHHHH
HELISQAKSKTDRSVLLVADGINDPHNLGAIIRTGEALGIQGLVIPQRRAVGITSTVTKV
HHHHHHHHCCCCCEEEEEECCCCCHHHCCEEEECCCCCCEEEEEECCCCCCCHHHHHHHH
AAGALENFPVARVINLNSALEELKKEGFWIYGTVAKDGEPIHTVKFTGAIVLVVGSEGEG
HHHHHHCCCEEEEEEHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCEEEEEECCCCCC
LSLLIQKNCDALVSIPMSGSTPSLNVSVATGMAIYEIHRQHWSKNLRI
EEEEEECCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]