| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475853
Identifier: 113475853
GI number: 113475853
Start: 3447381
End: 3447902
Strand: Direct
Name: 113475853
Synonym: Tery_2212
Alternate gene names: NA
Gene position: 3447381-3447902 (Clockwise)
Preceding gene: 113475852
Following gene: 113475854
Centisome position: 44.48
GC content: 36.78
Gene sequence:
>522_bases TTGTGGCAAGACAACCTAAGTTTAGGAGCTGCTCCTAACTATGCAGTAGCTTTACGAGCAGGTGCTGGTTTTGAAATGAC GGCAGAAATGGAAGAAAGATTTGAACAAGAACAAGACAATTTGACTAGTCCTAAATTACCTCGTATCAGAAATGTCTATC GCCTTCAACTAGTTACTGAAGACGATCCACATACTCCTATTGAAGAAAACTTATCTATTAAACTGCCATATCATACTAAA GGTAAACCAATAATTATTGGTGGTGATGGTAGTGATTATACTGATGTAGACATTTACTTGCCAGGTATTGCTGATAGATG TGCCTCTTTATCTGTAAATAACCGTGTCGTTGAAATTCAATGTTGGGCTACAGGAAAAGTTCAAATTAATCGAACTTTAA TGGAAAGAAGGGGAAAAAAGTCACTCCGCCACGGTCAAATTATAACCTTGTTACGAAACGATAAACCAGACAAATATTAC TGTTTTTGCTTCTATGACACTTTATATGATCCGCAAAGCTAA
Upstream 100 bases:
>100_bases CAATTGTACTTTATTAGAAGCACCCTGGCTTTATTTAAGTCCTTTTATTCTCCATTATCGTTAAAAGTATGACTCAGATT AGTATTATTGGTACTAGAGC
Downstream 100 bases:
>100_bases ACTGTTAGCAATAGCAGTTTTTTCTGCTATATTACCATTCGGTTGTGCCGCCATACCTGAAAATATAATTAGTCAAGATG ACTGTAGTAATACTAAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTEDDPHTPIEENLSIKLPYHTK GKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQCWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYY CFCFYDTLYDPQS
Sequences:
>Translated_173_residues MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTEDDPHTPIEENLSIKLPYHTK GKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQCWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYY CFCFYDTLYDPQS >Mature_173_residues MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTEDDPHTPIEENLSIKLPYHTK GKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQCWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYY CFCFYDTLYDPQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19772; Mature: 19772
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTE CCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC DDPHTPIEENLSIKLPYHTKGKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQ CCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHCCCCCCEEEEEE CWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYYCFCFYDTLYDPQS EEECCEEEEHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCC >Mature Secondary Structure MWQDNLSLGAAPNYAVALRAGAGFEMTAEMEERFEQEQDNLTSPKLPRIRNVYRLQLVTE CCCCCCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC DDPHTPIEENLSIKLPYHTKGKPIIIGGDGSDYTDVDIYLPGIADRCASLSVNNRVVEIQ CCCCCCCCCCCEEEECCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHCCCCCCEEEEEE CWATGKVQINRTLMERRGKKSLRHGQIITLLRNDKPDKYYCFCFYDTLYDPQS EEECCEEEEHHHHHHHCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA