Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475825

Identifier: 113475825

GI number: 113475825

Start: 3407336

End: 3408871

Strand: Direct

Name: 113475825

Synonym: Tery_2182

Alternate gene names: NA

Gene position: 3407336-3408871 (Clockwise)

Preceding gene: 113475821

Following gene: 113475826

Centisome position: 43.97

GC content: 31.58

Gene sequence:

>1536_bases
ATGAAAATTAAAAAGTTAATTTTAAGTATTCTGACTATTGTAGCGATCGCTTATATTAGTTTTTCTTTAATTAGTAGTGT
AACTCAGCCACAAATTCAAAGTCGTCTGGAGTTATATCAGACAAATTTATTGTTGCAGGCTGGGGAATGGAAACCTCAAG
ATTTAGATAGTAAAAATTTTTATTTAGCTAGTAAAACTTTGATTGGTAATGACTCTAAGCAAATTGGATTAATACAATAC
AAAAATGCTCGTGATTCGGCTCAAAAGCAATTGGAAAAACAAGAAAAAGATTTACAAATTTTATCTTTAGAGGAAGGAAT
AACAGCACAAAGTAAAAAGTTAAATGATGATATTAATCAGTTAAAAAAGTTAATTAATGAATTTGATCTTAATATTGGTA
TTTTGCAAATAGAAAAAAATCAAATAAATACAGCTCAGCAAAGTTGGCAAAATTTAACTGAGTCAGAAACTGCAAATAAA
CCTTTAGGAAAAACGGCAAAAGTTTTAGCAGAAATCTGGAGTACACCAGCCAAAATTTTACCTAATGCAGAATATTTAAT
CGAACAAAATTTAGATGGATGGTTTCGTTATAGTGCTTTTAAAAAACTATATAAATTACAGGAAAGAGAAGAAGATTTAG
CTCAACTGCAAAAACAGGAACAAGAGATAGCAGAACAAGCAGTATTAAAGTTAGCTATTATTGCCGGTGTGCCGGGAATA
GGATTAACATTTGGAGTAGGATTACTAATATTTTTAGGAGTGCAATGGTTAATTTTAGGAAAGGAATCTTTATTGTTAAA
AAATGCTGATTTACCTTGGGAAGTCAATTGGAATGGTGAAACAATTTTACAAGTATTTGTTGTCGGTTTTTTCTTGGTCG
GGCAAATTATTGTTCCTTTTGGATTAGAGGTTTTTAAAAGTTTCACAAATTTGCAACCTGCAATGATGGGAGTGCGAGTA
CAAGCAGGGTATATTCTTAGTGCTTATATTTTGTTTTCTCTAGGTGGTTTATTAGTATTGTATTTATCATTAAAGTCGTT
TTTTCCCTTACCGAAAGGTTGGTTTAAATTTGATTTACGTGGTGGTTGGTTTTTCTGGGGTTTAGGTGGTTATTTTTTAG
CTTTACCAATGGTCATTTTAATATCTCTAATTAATCAACAATTATGGCAAGGTCAAGGTGGTAGTAATCCCATTTTACCT
ATTGCTTTAAACGGGCAAGATGGTTTAGCTTTAGGTCTATTTTTTGTTACTGCTTCTATTGCAGCACCAGTTTTTGAGGA
AGTTATGTTTCGCGGATTTTTGTTACCTTCTTTGACAAAATATATGCCTATTTGGGGAGCAATTATTGTCAGTGGTTTTT
TATTTGCGATCGCACATTTGAATATTTCTGAAGTCTTACCTTTGGCAGTTTTGGGAATAATTTTAGGAGCAGTTTATACC
AGGTCTCGTAATCTTTTGTCTTCTATATTGTTACATAGTTTATGGAATAGTGGAACCTTGTTAAGTTTGTTTATTTTGGG
AAGTGGAAATTCCTAA

Upstream 100 bases:

>100_bases
GGAGAGAATAAGGTTACAGACTTTGCTCAGTGATGATTCACAGAAGCAGGAAACTAGCTCTAAAAAGCTGTTGAATAAGT
TTAGTAGAACGGAGATATTA

Downstream 100 bases:

>100_bases
TATTTATCAAGAATATAGCCGGACCCAAAAATATCAAAAACAGGCAAGATAGGAGCAAGAGAGCAAAATATTGCCACTGT
TCCCTTGACCAAAATAATTA

Product: abortive infection protein

Products: NA

Alternate protein names: Membrane-Associated Protease; Metal-Dependent Membrane Protease; Membrane Associated Protease; CAAX Amino Terminal Protease Family Protein; CAAX Amino Terminal Protease Family; Membrane Associated Protease-Like; CAAX Amino Protease

Number of amino acids: Translated: 511; Mature: 511

Protein sequence:

>511_residues
MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNFYLASKTLIGNDSKQIGLIQY
KNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQLKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANK
PLGKTAKVLAEIWSTPAKILPNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI
GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPFGLEVFKSFTNLQPAMMGVRV
QAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLRGGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILP
IALNGQDGLALGLFFVTASIAAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT
RSRNLLSSILLHSLWNSGTLLSLFILGSGNS

Sequences:

>Translated_511_residues
MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNFYLASKTLIGNDSKQIGLIQY
KNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQLKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANK
PLGKTAKVLAEIWSTPAKILPNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI
GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPFGLEVFKSFTNLQPAMMGVRV
QAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLRGGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILP
IALNGQDGLALGLFFVTASIAAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT
RSRNLLSSILLHSLWNSGTLLSLFILGSGNS
>Mature_511_residues
MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNFYLASKTLIGNDSKQIGLIQY
KNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQLKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANK
PLGKTAKVLAEIWSTPAKILPNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI
GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPFGLEVFKSFTNLQPAMMGVRV
QAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLRGGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILP
IALNGQDGLALGLFFVTASIAAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT
RSRNLLSSILLHSLWNSGTLLSLFILGSGNS

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56886; Mature: 56886

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCE
YLASKTLIGNDSKQIGLIQYKNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQ
EEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH
LKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANKPLGKTAKVLAEIWSTPAKIL
HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHC
PNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPF
HHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
GLEVFKSFTNLQPAMMGVRVQAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLR
HHHHHHHHHCCCHHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
GGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILPIALNGQDGLALGLFFVTASI
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
AAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RSRNLLSSILLHSLWNSGTLLSLFILGSGNS
HHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNF
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCE
YLASKTLIGNDSKQIGLIQYKNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQ
EEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH
LKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANKPLGKTAKVLAEIWSTPAKIL
HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHC
PNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPF
HHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH
GLEVFKSFTNLQPAMMGVRVQAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLR
HHHHHHHHHCCCHHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
GGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILPIALNGQDGLALGLFFVTASI
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
AAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RSRNLLSSILLHSLWNSGTLLSLFILGSGNS
HHHHHHHHHHHHHHCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA