| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113475825
Identifier: 113475825
GI number: 113475825
Start: 3407336
End: 3408871
Strand: Direct
Name: 113475825
Synonym: Tery_2182
Alternate gene names: NA
Gene position: 3407336-3408871 (Clockwise)
Preceding gene: 113475821
Following gene: 113475826
Centisome position: 43.97
GC content: 31.58
Gene sequence:
>1536_bases ATGAAAATTAAAAAGTTAATTTTAAGTATTCTGACTATTGTAGCGATCGCTTATATTAGTTTTTCTTTAATTAGTAGTGT AACTCAGCCACAAATTCAAAGTCGTCTGGAGTTATATCAGACAAATTTATTGTTGCAGGCTGGGGAATGGAAACCTCAAG ATTTAGATAGTAAAAATTTTTATTTAGCTAGTAAAACTTTGATTGGTAATGACTCTAAGCAAATTGGATTAATACAATAC AAAAATGCTCGTGATTCGGCTCAAAAGCAATTGGAAAAACAAGAAAAAGATTTACAAATTTTATCTTTAGAGGAAGGAAT AACAGCACAAAGTAAAAAGTTAAATGATGATATTAATCAGTTAAAAAAGTTAATTAATGAATTTGATCTTAATATTGGTA TTTTGCAAATAGAAAAAAATCAAATAAATACAGCTCAGCAAAGTTGGCAAAATTTAACTGAGTCAGAAACTGCAAATAAA CCTTTAGGAAAAACGGCAAAAGTTTTAGCAGAAATCTGGAGTACACCAGCCAAAATTTTACCTAATGCAGAATATTTAAT CGAACAAAATTTAGATGGATGGTTTCGTTATAGTGCTTTTAAAAAACTATATAAATTACAGGAAAGAGAAGAAGATTTAG CTCAACTGCAAAAACAGGAACAAGAGATAGCAGAACAAGCAGTATTAAAGTTAGCTATTATTGCCGGTGTGCCGGGAATA GGATTAACATTTGGAGTAGGATTACTAATATTTTTAGGAGTGCAATGGTTAATTTTAGGAAAGGAATCTTTATTGTTAAA AAATGCTGATTTACCTTGGGAAGTCAATTGGAATGGTGAAACAATTTTACAAGTATTTGTTGTCGGTTTTTTCTTGGTCG GGCAAATTATTGTTCCTTTTGGATTAGAGGTTTTTAAAAGTTTCACAAATTTGCAACCTGCAATGATGGGAGTGCGAGTA CAAGCAGGGTATATTCTTAGTGCTTATATTTTGTTTTCTCTAGGTGGTTTATTAGTATTGTATTTATCATTAAAGTCGTT TTTTCCCTTACCGAAAGGTTGGTTTAAATTTGATTTACGTGGTGGTTGGTTTTTCTGGGGTTTAGGTGGTTATTTTTTAG CTTTACCAATGGTCATTTTAATATCTCTAATTAATCAACAATTATGGCAAGGTCAAGGTGGTAGTAATCCCATTTTACCT ATTGCTTTAAACGGGCAAGATGGTTTAGCTTTAGGTCTATTTTTTGTTACTGCTTCTATTGCAGCACCAGTTTTTGAGGA AGTTATGTTTCGCGGATTTTTGTTACCTTCTTTGACAAAATATATGCCTATTTGGGGAGCAATTATTGTCAGTGGTTTTT TATTTGCGATCGCACATTTGAATATTTCTGAAGTCTTACCTTTGGCAGTTTTGGGAATAATTTTAGGAGCAGTTTATACC AGGTCTCGTAATCTTTTGTCTTCTATATTGTTACATAGTTTATGGAATAGTGGAACCTTGTTAAGTTTGTTTATTTTGGG AAGTGGAAATTCCTAA
Upstream 100 bases:
>100_bases GGAGAGAATAAGGTTACAGACTTTGCTCAGTGATGATTCACAGAAGCAGGAAACTAGCTCTAAAAAGCTGTTGAATAAGT TTAGTAGAACGGAGATATTA
Downstream 100 bases:
>100_bases TATTTATCAAGAATATAGCCGGACCCAAAAATATCAAAAACAGGCAAGATAGGAGCAAGAGAGCAAAATATTGCCACTGT TCCCTTGACCAAAATAATTA
Product: abortive infection protein
Products: NA
Alternate protein names: Membrane-Associated Protease; Metal-Dependent Membrane Protease; Membrane Associated Protease; CAAX Amino Terminal Protease Family Protein; CAAX Amino Terminal Protease Family; Membrane Associated Protease-Like; CAAX Amino Protease
Number of amino acids: Translated: 511; Mature: 511
Protein sequence:
>511_residues MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNFYLASKTLIGNDSKQIGLIQY KNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQLKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANK PLGKTAKVLAEIWSTPAKILPNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPFGLEVFKSFTNLQPAMMGVRV QAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLRGGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILP IALNGQDGLALGLFFVTASIAAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT RSRNLLSSILLHSLWNSGTLLSLFILGSGNS
Sequences:
>Translated_511_residues MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNFYLASKTLIGNDSKQIGLIQY KNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQLKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANK PLGKTAKVLAEIWSTPAKILPNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPFGLEVFKSFTNLQPAMMGVRV QAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLRGGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILP IALNGQDGLALGLFFVTASIAAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT RSRNLLSSILLHSLWNSGTLLSLFILGSGNS >Mature_511_residues MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNFYLASKTLIGNDSKQIGLIQY KNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQLKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANK PLGKTAKVLAEIWSTPAKILPNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPFGLEVFKSFTNLQPAMMGVRV QAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLRGGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILP IALNGQDGLALGLFFVTASIAAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT RSRNLLSSILLHSLWNSGTLLSLFILGSGNS
Specific function: Unknown
COG id: COG1266
COG function: function code R; Predicted metal-dependent membrane protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56886; Mature: 56886
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNF CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCE YLASKTLIGNDSKQIGLIQYKNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQ EEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH LKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANKPLGKTAKVLAEIWSTPAKIL HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHC PNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPF HHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH GLEVFKSFTNLQPAMMGVRVQAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLR HHHHHHHHHCCCHHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC GGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILPIALNGQDGLALGLFFVTASI CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH AAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH RSRNLLSSILLHSLWNSGTLLSLFILGSGNS HHHHHHHHHHHHHHCCCCCEEEEEEEECCCC >Mature Secondary Structure MKIKKLILSILTIVAIAYISFSLISSVTQPQIQSRLELYQTNLLLQAGEWKPQDLDSKNF CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCE YLASKTLIGNDSKQIGLIQYKNARDSAQKQLEKQEKDLQILSLEEGITAQSKKLNDDINQ EEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH LKKLINEFDLNIGILQIEKNQINTAQQSWQNLTESETANKPLGKTAKVLAEIWSTPAKIL HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHC PNAEYLIEQNLDGWFRYSAFKKLYKLQEREEDLAQLQKQEQEIAEQAVLKLAIIAGVPGI CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GLTFGVGLLIFLGVQWLILGKESLLLKNADLPWEVNWNGETILQVFVVGFFLVGQIIVPF HHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHH GLEVFKSFTNLQPAMMGVRVQAGYILSAYILFSLGGLLVLYLSLKSFFPLPKGWFKFDLR HHHHHHHHHCCCHHHHCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC GGWFFWGLGGYFLALPMVILISLINQQLWQGQGGSNPILPIALNGQDGLALGLFFVTASI CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH AAPVFEEVMFRGFLLPSLTKYMPIWGAIIVSGFLFAIAHLNISEVLPLAVLGIILGAVYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH RSRNLLSSILLHSLWNSGTLLSLFILGSGNS HHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA