Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475780

Identifier: 113475780

GI number: 113475780

Start: 3333233

End: 3333715

Strand: Direct

Name: 113475780

Synonym: Tery_2134

Alternate gene names: NA

Gene position: 3333233-3333715 (Clockwise)

Preceding gene: 113475779

Following gene: 113475781

Centisome position: 43.01

GC content: 29.4

Gene sequence:

>483_bases
ATGGTTTGTTACGTTAAAATAGATATTATTGAATCAGCGGAAGAACTAAAAGAAATATTATCTCGACAGACAGATATAAA
GCTCAAGCAAAAAGTACAAGCATTATATTGGCTTAAAATAGGAGCAGTAAATACTATTGAAAATATATCAATATTATTAG
GATGTCATCGAACAACTGTATCACGATGGTTTAGTACATATAGAAAGTTGGGTATAGAAGGTTTATTGAAGAAGAAAAAA
ATTTTGGGTAGACCTAGAAAAATATCACCTATGTTAGAAAAAAAACTTAGAGATGAGCTAAAAGATATAGAGAGTTTTAA
GAGTTATAATGAAGTGCAAACATGGTTAAAAGCAATGTGGGATATTAATCTGCCATACTCAACAGTACATCGGTATGTTT
ATTATAATTTAAATACTAAATTAAAAGGGTCACCTCCAATAAGTAGTCAACAAAATTCAACAGCAGTTGAGGACTCAAAA
TAA

Upstream 100 bases:

>100_bases
TAAATTACTCCAAGTAATACACCTGTCTATTGTTGATAAATATTCTACAATTTATACAAAATAATGTTATACTCTAATGG
CTGTTAAAATAGTGAATAAT

Downstream 100 bases:

>100_bases
AATATTTTAACTACTATCGAAGGTAATTGAAAAATTGAAAATAACGGGTAAGTAAATTTTGGAACAGAGTTAAGTTTTAC
CTAACTATTTAACTATCAGC

Product: putative transposase

Products: NA

Alternate protein names: Transposase OrfA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MVCYVKIDIIESAEELKEILSRQTDIKLKQKVQALYWLKIGAVNTIENISILLGCHRTTVSRWFSTYRKLGIEGLLKKKK
ILGRPRKISPMLEKKLRDELKDIESFKSYNEVQTWLKAMWDINLPYSTVHRYVYYNLNTKLKGSPPISSQQNSTAVEDSK

Sequences:

>Translated_160_residues
MVCYVKIDIIESAEELKEILSRQTDIKLKQKVQALYWLKIGAVNTIENISILLGCHRTTVSRWFSTYRKLGIEGLLKKKK
ILGRPRKISPMLEKKLRDELKDIESFKSYNEVQTWLKAMWDINLPYSTVHRYVYYNLNTKLKGSPPISSQQNSTAVEDSK
>Mature_160_residues
MVCYVKIDIIESAEELKEILSRQTDIKLKQKVQALYWLKIGAVNTIENISILLGCHRTTVSRWFSTYRKLGIEGLLKKKK
ILGRPRKISPMLEKKLRDELKDIESFKSYNEVQTWLKAMWDINLPYSTVHRYVYYNLNTKLKGSPPISSQQNSTAVEDSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18667; Mature: 18667

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVCYVKIDIIESAEELKEILSRQTDIKLKQKVQALYWLKIGAVNTIENISILLGCHRTTV
CEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SRWFSTYRKLGIEGLLKKKKILGRPRKISPMLEKKLRDELKDIESFKSYNEVQTWLKAMW
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DINLPYSTVHRYVYYNLNTKLKGSPPISSQQNSTAVEDSK
CCCCCHHHHHHEEEEECCCEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVCYVKIDIIESAEELKEILSRQTDIKLKQKVQALYWLKIGAVNTIENISILLGCHRTTV
CEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
SRWFSTYRKLGIEGLLKKKKILGRPRKISPMLEKKLRDELKDIESFKSYNEVQTWLKAMW
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DINLPYSTVHRYVYYNLNTKLKGSPPISSQQNSTAVEDSK
CCCCCHHHHHHEEEEECCCEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA