| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475719
Identifier: 113475719
GI number: 113475719
Start: 3229985
End: 3230479
Strand: Direct
Name: 113475719
Synonym: Tery_2066
Alternate gene names: NA
Gene position: 3229985-3230479 (Clockwise)
Preceding gene: 113475718
Following gene: 113475731
Centisome position: 41.68
GC content: 33.13
Gene sequence:
>495_bases ATGAGTTTACTAAATAAGGTATTTGAAGCTTACAATGGACATCGGGTTATGTTTTCACAACCTGAAGCAATAGCTGCAAT TGCAGCGTCTGCAATTGCTTCAGATGGTTATCTTTTAGAACAAGAAACAGAGCTGGTTATAACACTTTTATCTCAAATGG AAGTATTTAAAGGCTATTCAGAAAAACAAATTACGAATATGCTTAATAGGTTGTTAAGTACACTCAGCGTCAAAGGAATT AATAATGTAGTAGCGATAGCTAATGATTCACTACATCCGGAGTACAAAGAAGCAGTTTTTATGTTAGCTACTGAAATAAT TTTAGTAGATGGGGTTTTATGTGGTAAAGAACAAGCGTTTTTAATTGATTTGTTTCAGGTATTGGAAATCTCTTCAGAAA GGGCTTCACAAATTTTTACCTCTAAATCAGAGGCCTATCGGGTTACTAATAAGAAATCTAAAAACTATAGAATTAATCAA GGTTCTCTTAAGTAG
Upstream 100 bases:
>100_bases AATTATCTTGTGATATAGTCGACAGACTGTATTAAAGGGGTTATTCAAAATAAATATAATACAACGACTATAAACAATCA ATTAGGAGACTATACCTAAG
Downstream 100 bases:
>100_bases ATGAGAATATAGTTTGATCATAAAATTACGAACATAGATATACTAGATAACTTAAGGATCATTTCTTATTGATTAATTTA TTTACATGAAATAATTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MSLLNKVFEAYNGHRVMFSQPEAIAAIAASAIASDGYLLEQETELVITLLSQMEVFKGYSEKQITNMLNRLLSTLSVKGI NNVVAIANDSLHPEYKEAVFMLATEIILVDGVLCGKEQAFLIDLFQVLEISSERASQIFTSKSEAYRVTNKKSKNYRINQ GSLK
Sequences:
>Translated_164_residues MSLLNKVFEAYNGHRVMFSQPEAIAAIAASAIASDGYLLEQETELVITLLSQMEVFKGYSEKQITNMLNRLLSTLSVKGI NNVVAIANDSLHPEYKEAVFMLATEIILVDGVLCGKEQAFLIDLFQVLEISSERASQIFTSKSEAYRVTNKKSKNYRINQ GSLK >Mature_163_residues SLLNKVFEAYNGHRVMFSQPEAIAAIAASAIASDGYLLEQETELVITLLSQMEVFKGYSEKQITNMLNRLLSTLSVKGIN NVVAIANDSLHPEYKEAVFMLATEIILVDGVLCGKEQAFLIDLFQVLEISSERASQIFTSKSEAYRVTNKKSKNYRINQG SLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18257; Mature: 18126
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLNKVFEAYNGHRVMFSQPEAIAAIAASAIASDGYLLEQETELVITLLSQMEVFKGYS CHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCC EKQITNMLNRLLSTLSVKGINNVVAIANDSLHPEYKEAVFMLATEIILVDGVLCGKEQAF HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH LIDLFQVLEISSERASQIFTSKSEAYRVTNKKSKNYRINQGSLK HHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCCCEECCCCCCC >Mature Secondary Structure SLLNKVFEAYNGHRVMFSQPEAIAAIAASAIASDGYLLEQETELVITLLSQMEVFKGYS HHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHCCCC EKQITNMLNRLLSTLSVKGINNVVAIANDSLHPEYKEAVFMLATEIILVDGVLCGKEQAF HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH LIDLFQVLEISSERASQIFTSKSEAYRVTNKKSKNYRINQGSLK HHHHHHHHHHHHHHHHHHHHCCHHHEEECCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA