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The map label for this gene is glcF [H]

Identifier: 113475709

GI number: 113475709

Start: 3207590

End: 3209005

Strand: Direct

Name: glcF [H]

Synonym: Tery_2056

Alternate gene names: 113475709

Gene position: 3207590-3209005 (Clockwise)

Preceding gene: 113475707

Following gene: 113475710

Centisome position: 41.39

GC content: 33.76

Gene sequence:

>1416_bases
ATGGATCTCAAAGACATAAGTATTCAAAGTAATCCAACAATTCCAGCGAAAGATAGCAAATTTTTACAGCAAAATCCACA
CTTGCAATCTGACTTAGATCACTCTAGTTTTGACTCTAAAAATCCACCATCACCAGAATTAATTGGTGCCTGCGTCCACT
GTGGATTTTGTTTATCAACATGTCCTAGTTATCGAGTAATAGGCAAAGAAATGGATTCTCCCAGGGGCAGAATTTATGTT
ATGGATGCTATTAACAATGGAGAAGCATCTTTAAATCAAACAAGTTCTCAACATTTTGATACTTGCTTAGGTTGTCTCGC
TTGTGTAACTACTTGCCCTTCAGGAGTTAGATATGATAAATTAATTGCTGCAACTCGCCCACAAGTAGAACGAAACATTC
CCCGTTCATTACCTGATAAATTAATTCGTAGTCTGATATTTAATTTATTTCCTTATCCTAATAGATTACGACCTTTACTT
ATTCCTTTATTTATTTATCAAAAATTAGGATTTAACAAACTAATTCGTAGTAGCAAATTACTTGATAAAATATCTCCTAG
ATTAGCAGCAATGGAATCTATTCTACCAGAAATTACAGTTGATTCTTTCTCTAATAATTATCCAAATATTATTCCGGCTG
AAGGAGAAAAACGTTATCGAGTTGGTTTGATTTTAGGTTGTGTTCAAAGAATATTTTTCTCCTCTGTTAATATGGCAACA
ATTCGAGTTTTAACTGCTAATGGTTGTGAAGTTGTGATTCCTAAAAGTCAAGGTTGTTGTGCTGCATTGCCAGAACATCA
AGGACAAACCGAACAAGCTCATGCTTTGGCAAAACAAATGATCGATAGTTTTGTAAATACAGGAGTTGATGCAGTTATTA
TTAATGCTGCTGGTTGTGGTCACACTCTTAAAGAATACGATAATATTCTACAGGATGATTCTGAGTATTGTGACAAGGCA
AAAGAATTTTCTAATAAAGTTAAAGATGTGCAAGAATTCTTAGCAAATGTAGGATTGACAGCTAAACTTTATCCTTTGGT
TGAGGAAGAAGAATTGACTATAGTTTATCAAGATGCTTGCCATTTGTTGCACGGTCAAAAAATTAGTTTAGAACCTAGAA
AATTGCTGCTAAAAATTCCTGGGGTGAAGTTGCGTGAACCTATAGATGCAGCTTTATGTTGTGGAAGTGCGGGAGTCTAT
AATATGCTACAACCGGAAACAGCTAATGAATTAGGAGAACAAAAAGTAGAAAACTTATTGAATACAGGTGCAGAATTAAT
TGCTTCTCCTAATCCTGGATGTTCTTTACAAATTAAAAAGCATTTAGATTTGCAAGGTAATAATATGAGTTTAATGCACC
CAATAGAATTATTAGATTATTCAATTCGGGAGGTAAAGTTAAATCTAAAAAAGTAA

Upstream 100 bases:

>100_bases
TATGAGTTAATATTCAATCCTACTTTCATTATTAATTATCAAAAAAATTAATGTATAATATTATTTATGAACTTTAGGAT
TGAAAAAAATCATATAAAAA

Downstream 100 bases:

>100_bases
ATAATAAACTAGTCTAATTTATGTCTAAACAGGAAGCGATCGCTCTGTTTTTGAAAATAAAAAATAGTAAGTATTAGTAT
TATTAGGCATACTATTAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MDLKDISIQSNPTIPAKDSKFLQQNPHLQSDLDHSSFDSKNPPSPELIGACVHCGFCLSTCPSYRVIGKEMDSPRGRIYV
MDAINNGEASLNQTSSQHFDTCLGCLACVTTCPSGVRYDKLIAATRPQVERNIPRSLPDKLIRSLIFNLFPYPNRLRPLL
IPLFIYQKLGFNKLIRSSKLLDKISPRLAAMESILPEITVDSFSNNYPNIIPAEGEKRYRVGLILGCVQRIFFSSVNMAT
IRVLTANGCEVVIPKSQGCCAALPEHQGQTEQAHALAKQMIDSFVNTGVDAVIINAAGCGHTLKEYDNILQDDSEYCDKA
KEFSNKVKDVQEFLANVGLTAKLYPLVEEEELTIVYQDACHLLHGQKISLEPRKLLLKIPGVKLREPIDAALCCGSAGVY
NMLQPETANELGEQKVENLLNTGAELIASPNPGCSLQIKKHLDLQGNNMSLMHPIELLDYSIREVKLNLKK

Sequences:

>Translated_471_residues
MDLKDISIQSNPTIPAKDSKFLQQNPHLQSDLDHSSFDSKNPPSPELIGACVHCGFCLSTCPSYRVIGKEMDSPRGRIYV
MDAINNGEASLNQTSSQHFDTCLGCLACVTTCPSGVRYDKLIAATRPQVERNIPRSLPDKLIRSLIFNLFPYPNRLRPLL
IPLFIYQKLGFNKLIRSSKLLDKISPRLAAMESILPEITVDSFSNNYPNIIPAEGEKRYRVGLILGCVQRIFFSSVNMAT
IRVLTANGCEVVIPKSQGCCAALPEHQGQTEQAHALAKQMIDSFVNTGVDAVIINAAGCGHTLKEYDNILQDDSEYCDKA
KEFSNKVKDVQEFLANVGLTAKLYPLVEEEELTIVYQDACHLLHGQKISLEPRKLLLKIPGVKLREPIDAALCCGSAGVY
NMLQPETANELGEQKVENLLNTGAELIASPNPGCSLQIKKHLDLQGNNMSLMHPIELLDYSIREVKLNLKK
>Mature_471_residues
MDLKDISIQSNPTIPAKDSKFLQQNPHLQSDLDHSSFDSKNPPSPELIGACVHCGFCLSTCPSYRVIGKEMDSPRGRIYV
MDAINNGEASLNQTSSQHFDTCLGCLACVTTCPSGVRYDKLIAATRPQVERNIPRSLPDKLIRSLIFNLFPYPNRLRPLL
IPLFIYQKLGFNKLIRSSKLLDKISPRLAAMESILPEITVDSFSNNYPNIIPAEGEKRYRVGLILGCVQRIFFSSVNMAT
IRVLTANGCEVVIPKSQGCCAALPEHQGQTEQAHALAKQMIDSFVNTGVDAVIINAAGCGHTLKEYDNILQDDSEYCDKA
KEFSNKVKDVQEFLANVGLTAKLYPLVEEEELTIVYQDACHLLHGQKISLEPRKLLLKIPGVKLREPIDAALCCGSAGVY
NMLQPETANELGEQKVENLLNTGAELIASPNPGCSLQIKKHLDLQGNNMSLMHPIELLDYSIREVKLNLKK

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=420, Percent_Identity=33.3333333333333, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1786497, Length=242, Percent_Identity=25.2066115702479, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788576, Length=427, Percent_Identity=23.4192037470726, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 52135; Mature: 52135

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKDISIQSNPTIPAKDSKFLQQNPHLQSDLDHSSFDSKNPPSPELIGACVHCGFCLST
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
CPSYRVIGKEMDSPRGRIYVMDAINNGEASLNQTSSQHFDTCLGCLACVTTCPSGVRYDK
CCCCEEHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
LIAATRPQVERNIPRSLPDKLIRSLIFNLFPYPNRLRPLLIPLFIYQKLGFNKLIRSSKL
HHHHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
LDKISPRLAAMESILPEITVDSFSNNYPNIIPAEGEKRYRVGLILGCVQRIFFSSVNMAT
HHHHHHHHHHHHHHHCCCCHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
IRVLTANGCEVVIPKSQGCCAALPEHQGQTEQAHALAKQMIDSFVNTGVDAVIINAAGCG
EEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
HTLKEYDNILQDDSEYCDKAKEFSNKVKDVQEFLANVGLTAKLYPLVEEEELTIVYQDAC
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEHHHH
HLLHGQKISLEPRKLLLKIPGVKLREPIDAALCCGSAGVYNMLQPETANELGEQKVENLL
HHHCCCCCCCCHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
NTGAELIASPNPGCSLQIKKHLDLQGNNMSLMHPIELLDYSIREVKLNLKK
HCCHHHCCCCCCCCEEEEEECCCCCCCCEEHCCHHHHHHHHHHHHEEECCC
>Mature Secondary Structure
MDLKDISIQSNPTIPAKDSKFLQQNPHLQSDLDHSSFDSKNPPSPELIGACVHCGFCLST
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
CPSYRVIGKEMDSPRGRIYVMDAINNGEASLNQTSSQHFDTCLGCLACVTTCPSGVRYDK
CCCCEEHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
LIAATRPQVERNIPRSLPDKLIRSLIFNLFPYPNRLRPLLIPLFIYQKLGFNKLIRSSKL
HHHHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
LDKISPRLAAMESILPEITVDSFSNNYPNIIPAEGEKRYRVGLILGCVQRIFFSSVNMAT
HHHHHHHHHHHHHHHCCCCHHCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
IRVLTANGCEVVIPKSQGCCAALPEHQGQTEQAHALAKQMIDSFVNTGVDAVIINAAGCG
EEEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
HTLKEYDNILQDDSEYCDKAKEFSNKVKDVQEFLANVGLTAKLYPLVEEEELTIVYQDAC
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEHHHH
HLLHGQKISLEPRKLLLKIPGVKLREPIDAALCCGSAGVYNMLQPETANELGEQKVENLL
HHHCCCCCCCCHHHHHEECCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
NTGAELIASPNPGCSLQIKKHLDLQGNNMSLMHPIELLDYSIREVKLNLKK
HCCHHHCCCCCCCCEEEEEECCCCCCCCEEHCCHHHHHHHHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]