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The map label for this gene is ykfC [H]

Identifier: 113475685

GI number: 113475685

Start: 3153509

End: 3154303

Strand: Direct

Name: ykfC [H]

Synonym: Tery_2026

Alternate gene names: 113475685

Gene position: 3153509-3154303 (Clockwise)

Preceding gene: 113475683

Following gene: 113475686

Centisome position: 40.69

GC content: 39.87

Gene sequence:

>795_bases
ATGCTTGACCAAATTTGTGTCAATCCTAACCTTAAATGGAGGGATATAGACTGGAAAAAAGTTGAGCGGTATGTGTTTAA
GTTACAAAAGTTAATCTATAAAGCATCCAGCCGTGGCAAAATCCGCAAAATGCGTAAATACCAAAAACTTCTGACCAAAA
GTTATGATGCTAGGTTGCTAGCTGTTAGGCGTGTGACTCAGGAAAACCAGGGGAAGAAAACTGTGGGTATAGATGGTATA
AAAAGTCTTCCCCCAATGCAGAGATTTAACTTGGTAGAAATGTTAAAGTCACGATATCTTAAAGCAAGCCCTACCCGTAG
AGTCTGGATACCAAAACCAGGGAAAGAAGAAAAACGTCCATTAAGCATACCTACTTTGTATGATAGGGCCCTTCAAGCAC
TGGTAAAGTTAGGTAGGTCACCAGAATGGGAGGCCCTTTTTGAACCTAATAGTTATGGTCTTTTCCGGAGGTCAACATAC
GATGCTATTGCAGCAATCTATGACAGCATCAACAAAAAACCAAAATACGTTTTAGATGCTGACATATCCAAATGTTTTGA
CCGAATTAACCATGATGCGTTGTTGAGAAAAGTAGGACGAACACCTTACAGACGATTAATCAAACAATGGTTAAAGTCCG
GGGTATTTGATAACAAACATTTCTCAGAAACTATGGAAGGTACACCACAGGGAGGGGTTATATCACCCTTACTAGCAAAC
ATCGCCTTACACGGGGAAAGAAAAATGTCTAGAAAAATATGCCGAAACCCTTCCGGGAGTAAAGGCAAAAAATAA

Upstream 100 bases:

>100_bases
TAATATAGAGTAATGATTAGTCATGAAAAAAGCTGAAATACTAAAAAGAAGATTGGGTAATCCAAAACCCTTTTTAAGTG
TGGCATGGGACACTTACGAT

Downstream 100 bases:

>100_bases
ACAGGCATTAACCCTAGTAAGATATGCTGATGACTTTGTAATTCTACACAAAGATATCAAAGTATTGTTACAAGCAAAAG
CCGTAATACAGGATTGGTTA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MLDQICVNPNLKWRDIDWKKVERYVFKLQKLIYKASSRGKIRKMRKYQKLLTKSYDARLLAVRRVTQENQGKKTVGIDGI
KSLPPMQRFNLVEMLKSRYLKASPTRRVWIPKPGKEEKRPLSIPTLYDRALQALVKLGRSPEWEALFEPNSYGLFRRSTY
DAIAAIYDSINKKPKYVLDADISKCFDRINHDALLRKVGRTPYRRLIKQWLKSGVFDNKHFSETMEGTPQGGVISPLLAN
IALHGERKMSRKICRNPSGSKGKK

Sequences:

>Translated_264_residues
MLDQICVNPNLKWRDIDWKKVERYVFKLQKLIYKASSRGKIRKMRKYQKLLTKSYDARLLAVRRVTQENQGKKTVGIDGI
KSLPPMQRFNLVEMLKSRYLKASPTRRVWIPKPGKEEKRPLSIPTLYDRALQALVKLGRSPEWEALFEPNSYGLFRRSTY
DAIAAIYDSINKKPKYVLDADISKCFDRINHDALLRKVGRTPYRRLIKQWLKSGVFDNKHFSETMEGTPQGGVISPLLAN
IALHGERKMSRKICRNPSGSKGKK
>Mature_264_residues
MLDQICVNPNLKWRDIDWKKVERYVFKLQKLIYKASSRGKIRKMRKYQKLLTKSYDARLLAVRRVTQENQGKKTVGIDGI
KSLPPMQRFNLVEMLKSRYLKASPTRRVWIPKPGKEEKRPLSIPTLYDRALQALVKLGRSPEWEALFEPNSYGLFRRSTY
DAIAAIYDSINKKPKYVLDADISKCFDRINHDALLRKVGRTPYRRLIKQWLKSGVFDNKHFSETMEGTPQGGVISPLLAN
IALHGERKMSRKICRNPSGSKGKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=202, Percent_Identity=28.2178217821782, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6226521, Length=181, Percent_Identity=28.1767955801105, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 30680; Mature: 30680

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDQICVNPNLKWRDIDWKKVERYVFKLQKLIYKASSRGKIRKMRKYQKLLTKSYDARLL
CCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AVRRVTQENQGKKTVGIDGIKSLPPMQRFNLVEMLKSRYLKASPTRRVWIPKPGKEEKRP
HHHHHHHHCCCCCEECCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCC
LSIPTLYDRALQALVKLGRSPEWEALFEPNSYGLFRRSTYDAIAAIYDSINKKPKYVLDA
CCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
DISKCFDRINHDALLRKVGRTPYRRLIKQWLKSGVFDNKHFSETMEGTPQGGVISPLLAN
HHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHH
IALHGERKMSRKICRNPSGSKGKK
HHHCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLDQICVNPNLKWRDIDWKKVERYVFKLQKLIYKASSRGKIRKMRKYQKLLTKSYDARLL
CCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
AVRRVTQENQGKKTVGIDGIKSLPPMQRFNLVEMLKSRYLKASPTRRVWIPKPGKEEKRP
HHHHHHHHCCCCCEECCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCC
LSIPTLYDRALQALVKLGRSPEWEALFEPNSYGLFRRSTYDAIAAIYDSINKKPKYVLDA
CCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECH
DISKCFDRINHDALLRKVGRTPYRRLIKQWLKSGVFDNKHFSETMEGTPQGGVISPLLAN
HHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHH
IALHGERKMSRKICRNPSGSKGKK
HHHCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]