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The map label for this gene is ydcM [C]

Identifier: 113475664

GI number: 113475664

Start: 3119527

End: 3120756

Strand: Direct

Name: ydcM [C]

Synonym: Tery_2003

Alternate gene names: 113475664

Gene position: 3119527-3120756 (Clockwise)

Preceding gene: 113475663

Following gene: 113475665

Centisome position: 40.25

GC content: 36.99

Gene sequence:

>1230_bases
ATGGTTGTTGATCAAAAAAACATAAAAAACTATTACTGGGTTTACTTGAGGAAGTCGCTCAAGTTGTGGGAAAAACTGAT
AATCATGCTACTAGGATTTAAAACAGAACTCTACCCAAATAACTCACAAAAAACCTTACTAGCTAAACACGCTGGTGTCG
CACGTCATGCTTGGAATTGGGGCTTATGGTTAACTAGAAATATCCTTACTCACAATTCCAATAATCCTGATAGTAAACTT
AAATTTCCCACATCTATCGACCTGCATAAGCTTTTAGTAGCAATAGTTAAACCTAATAGCTATTGGTATTACGAAGTATC
TAAAACAGCACCTCAATATGCTTTGAGGCATTTATCCAATGCTTGGAAACGTTGCTTAACTAAAGTGTCTGCTCAACCTA
AATTCAAGAAAAAAGGTAGGGATGATAGTTTCACTTTGGATGGTTCAATTATAGTCGGTTTTAATCAGATTAAATTACCT
CGAATTGGATGGGTGAAAACCTTTGAAATTTTGCCAGATAATGTCACTCCCAAGTCTGTAACTATTAGCAAAAAAGCTGA
TAGATGGTTTGTCAGTTTCAAGATAGAAACAGCAACCATAGTCACTGAGAAATCAGTTGATGTAGTTGGTGTAGATTTGG
GTATGAAATCACTAGCTACCCTATCAACTGGGGAGGTATTCCCTGGTGCAAAATCTTATAGAAATTTAGAAGTTAAACTT
TCTAGGTTGCAATACTTGAACCGACATAAAGTGAAATTTTCGTCTAACTGGAAAAAAGCGCAACTCAAAATAGCCAAGTT
ACATAATAGAATAGCTAACATCAGGAAAGATACACTGCATAAACTAACTACTTATTTGGCTAAAAACCACAGTCAAATAG
TAATAGAAGACCTAAATGTATCAGGAATGATGTCAAATTACAAGCTGGCTAAGGCTGTTGCCGATATGGGTTTTTACGAA
TTTCGCAGACAATTAAAGTACAAATGTCAACTGTATGGCTCTAAGTTAACCATTGTGGATAGATGGTTTCCTAGTTCTAA
AACTTGCAGTAGGTGTGGAACTGTTAAAGAATCTCTGTTGTTATCAGAGCGCGTTTTCAATTGCGAACATTGCAAATTCA
GTTGCGACCGAGACTTGAATACAGCGTTAAATTTAGCTATGGCGGTCAGTTCGACCGTGACAGCTTGTGGACTGGATAAC
GCCGACGTTGCCAGAATGAAGCAGGAATAG

Upstream 100 bases:

>100_bases
ATTGAGATAGTTATTATTAACAAAGGTGAACAACCAAGTTTTGAAGAAGAACTAGCTCAAGATGTACTAGAAATAATCAC
AGTTTTTTCAGCTAGGCTTT

Downstream 100 bases:

>100_bases
AACAGATAATCATAGATTCATATAGATTATCATAGGTTTTTAATAACGGTTGTGTGCAATATTCCTACTGAAATAAAGGA
ATGCACATACCTTAATGTTT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MVVDQKNIKNYYWVYLRKSLKLWEKLIIMLLGFKTELYPNNSQKTLLAKHAGVARHAWNWGLWLTRNILTHNSNNPDSKL
KFPTSIDLHKLLVAIVKPNSYWYYEVSKTAPQYALRHLSNAWKRCLTKVSAQPKFKKKGRDDSFTLDGSIIVGFNQIKLP
RIGWVKTFEILPDNVTPKSVTISKKADRWFVSFKIETATIVTEKSVDVVGVDLGMKSLATLSTGEVFPGAKSYRNLEVKL
SRLQYLNRHKVKFSSNWKKAQLKIAKLHNRIANIRKDTLHKLTTYLAKNHSQIVIEDLNVSGMMSNYKLAKAVADMGFYE
FRRQLKYKCQLYGSKLTIVDRWFPSSKTCSRCGTVKESLLLSERVFNCEHCKFSCDRDLNTALNLAMAVSSTVTACGLDN
ADVARMKQE

Sequences:

>Translated_409_residues
MVVDQKNIKNYYWVYLRKSLKLWEKLIIMLLGFKTELYPNNSQKTLLAKHAGVARHAWNWGLWLTRNILTHNSNNPDSKL
KFPTSIDLHKLLVAIVKPNSYWYYEVSKTAPQYALRHLSNAWKRCLTKVSAQPKFKKKGRDDSFTLDGSIIVGFNQIKLP
RIGWVKTFEILPDNVTPKSVTISKKADRWFVSFKIETATIVTEKSVDVVGVDLGMKSLATLSTGEVFPGAKSYRNLEVKL
SRLQYLNRHKVKFSSNWKKAQLKIAKLHNRIANIRKDTLHKLTTYLAKNHSQIVIEDLNVSGMMSNYKLAKAVADMGFYE
FRRQLKYKCQLYGSKLTIVDRWFPSSKTCSRCGTVKESLLLSERVFNCEHCKFSCDRDLNTALNLAMAVSSTVTACGLDN
ADVARMKQE
>Mature_409_residues
MVVDQKNIKNYYWVYLRKSLKLWEKLIIMLLGFKTELYPNNSQKTLLAKHAGVARHAWNWGLWLTRNILTHNSNNPDSKL
KFPTSIDLHKLLVAIVKPNSYWYYEVSKTAPQYALRHLSNAWKRCLTKVSAQPKFKKKGRDDSFTLDGSIIVGFNQIKLP
RIGWVKTFEILPDNVTPKSVTISKKADRWFVSFKIETATIVTEKSVDVVGVDLGMKSLATLSTGEVFPGAKSYRNLEVKL
SRLQYLNRHKVKFSSNWKKAQLKIAKLHNRIANIRKDTLHKLTTYLAKNHSQIVIEDLNVSGMMSNYKLAKAVADMGFYE
FRRQLKYKCQLYGSKLTIVDRWFPSSKTCSRCGTVKESLLLSERVFNCEHCKFSCDRDLNTALNLAMAVSSTVTACGLDN
ADVARMKQE

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=326, Percent_Identity=35.2760736196319, Blast_Score=190, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46930; Mature: 46930

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVDQKNIKNYYWVYLRKSLKLWEKLIIMLLGFKTELYPNNSQKTLLAKHAGVARHAWNW
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEHHHHCCHHHHCCCC
GLWLTRNILTHNSNNPDSKLKFPTSIDLHKLLVAIVKPNSYWYYEVSKTAPQYALRHLSN
CCEEEEHHHCCCCCCCCCCEECCCCCCHHHHEEEEECCCCEEEEEECCCCHHHHHHHHHH
AWKRCLTKVSAQPKFKKKGRDDSFTLDGSIIVGFNQIKLPRIGWVKTFEILPDNVTPKSV
HHHHHHHHHCCCCCHHHCCCCCCEEECCEEEEEECEEECCCCCCEEEEEECCCCCCCCEE
TISKKADRWFVSFKIETATIVTEKSVDVVGVDLGMKSLATLSTGEVFPGAKSYRNLEVKL
EEECCCCEEEEEEEEEEEEEEEECCCEEEEECCCHHHHHHCCCCCCCCCCHHHCCHHHHH
SRLQYLNRHKVKFSSNWKKAQLKIAKLHNRIANIRKDTLHKLTTYLAKNHSQIVIEDLNV
HHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
SGMMSNYKLAKAVADMGFYEFRRQLKYKCQLYGSKLTIVDRWFPSSKTCSRCGTVKESLL
CCCCCCHHHHHHHHHCCHHHHHHHHHHEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHH
LSERVFNCEHCKFSCDRDLNTALNLAMAVSSTVTACGLDNADVARMKQE
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
>Mature Secondary Structure
MVVDQKNIKNYYWVYLRKSLKLWEKLIIMLLGFKTELYPNNSQKTLLAKHAGVARHAWNW
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEECCCCCCCEEHHHHCCHHHHCCCC
GLWLTRNILTHNSNNPDSKLKFPTSIDLHKLLVAIVKPNSYWYYEVSKTAPQYALRHLSN
CCEEEEHHHCCCCCCCCCCEECCCCCCHHHHEEEEECCCCEEEEEECCCCHHHHHHHHHH
AWKRCLTKVSAQPKFKKKGRDDSFTLDGSIIVGFNQIKLPRIGWVKTFEILPDNVTPKSV
HHHHHHHHHCCCCCHHHCCCCCCEEECCEEEEEECEEECCCCCCEEEEEECCCCCCCCEE
TISKKADRWFVSFKIETATIVTEKSVDVVGVDLGMKSLATLSTGEVFPGAKSYRNLEVKL
EEECCCCEEEEEEEEEEEEEEEECCCEEEEECCCHHHHHHCCCCCCCCCCHHHCCHHHHH
SRLQYLNRHKVKFSSNWKKAQLKIAKLHNRIANIRKDTLHKLTTYLAKNHSQIVIEDLNV
HHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
SGMMSNYKLAKAVADMGFYEFRRQLKYKCQLYGSKLTIVDRWFPSSKTCSRCGTVKESLL
CCCCCCHHHHHHHHHCCHHHHHHHHHHEEEEECCEEEEEEECCCCCCHHHHHHHHHHHHH
LSERVFNCEHCKFSCDRDLNTALNLAMAVSSTVTACGLDNADVARMKQE
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]