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The map label for this gene is yhdY [H]

Identifier: 113475661

GI number: 113475661

Start: 3116621

End: 3117832

Strand: Direct

Name: yhdY [H]

Synonym: Tery_2000

Alternate gene names: 113475661

Gene position: 3116621-3117832 (Clockwise)

Preceding gene: 113475660

Following gene: 113475662

Centisome position: 40.21

GC content: 32.67

Gene sequence:

>1212_bases
ATGAAAAAAATTAATACAAATGAATTCTATGCTCCACCATTTCCAGAAAATAATGCCATCAAATGGCTCAGAGAAAATTT
TTTTAGTACCTGGTACAACACCCTACTAAGCTTAATATTATTCAGCCTAATTTTATGGGGTGTAATTAACTTTATTTCCT
GGGCAAAAACAGAAGCAGAATGGCAAGTTATAAAAGTTAACTTGCCATTATTAATGGTGGGTAGATATCCTAGAGACCAA
TATTGGCGCATCTGGGTAATAGTCGGAATAATTTCTAGTTTATTTGGTTTTTCTTGGGGAGTTATTGCTAGAAATTCAGC
TCAACTATTTACGTTGCCAGTTTTAATTGGCATCGCTTTTTTACCTGTAATTATATTAATTATCCCAGTAAATGTATTTT
TTAAACTATTACTATTAGGGATGGTAATTTTAGTTGTTGCTACAGCCTGGAGTGGAAAAAAATTAAGCATAAAAAATAGC
AAATTAGGGAAATATCTATCTTTTTATTGGTTGATTGCTTTTATCTTAATTGTCTGGTTAATTGGGGGCGGTTTGGGTCT
AAAGTCTGTTTCTACAAATGACTGGGGTGGTTTAATGCTAACTGTATTAATGGCTGTAGTTAGCATTTTTTTATCTTTTC
CATTAGGGGTTTTATTAGCTTTGGGCAGACAAAGTACATTACCAGTAATTAGAATTTTTTCTATTGGTTATATTGAAATT
ATTCGTGGATTACCTTTAATTTCAATTCTATTTATGGGGCAAATTCTGATTCCTCTATTTTTGCCAGATGGAATGCGACC
TGATAGAATTTTTCGGGCAATTTTAGGATTGACTTTATTTAGTGCTGCTTATTTAGCAGAGAATGTTAGGGGTGGTTTAC
AGTCGGTACTAAGAGGTCAAAGTGAAGCGGCAAAAGCATTAGGTTTAAATACTCCATTGAGTTTAGGATTAATTGTTTTA
CCTCAAGCTTTAAAAGTAGCTATTCCCTCTATTGTTGGTCAATTTATTAGTCTATTTCAGGATACTACTTTATTATCAAT
TGTGGGATTAGTAGAGTTGTTGGGTATTAGTCGCTCTATTTTAGCTCAACCTGAATTTTTAGGAGATTATGCTGAGGTTT
ATTTATTTGATGGTATCATTTTTTGGATTGTTTGTTATGCTATGTCAGTAGGTAGTCGGCAGTTGGAGAAAAAACTAAAT
ACTACGAATTAA

Upstream 100 bases:

>100_bases
GATAGTTCAGGAAATAGCTTGATTAAATGTCAAACAATTATTATATAAAAGTTTGATAGTATTCAAATATAATTTTTTGC
CAAAGTACCATTATGAATGT

Downstream 100 bases:

>100_bases
TTATAGTTATTGGATATTAGTTGAAATCAAAACTATTACTTGTAAAAGATTTCAATTTTATTAATGTTTTTTCTTACTCG
TTCTATTCTGGCTCTATTCT

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MKKINTNEFYAPPFPENNAIKWLRENFFSTWYNTLLSLILFSLILWGVINFISWAKTEAEWQVIKVNLPLLMVGRYPRDQ
YWRIWVIVGIISSLFGFSWGVIARNSAQLFTLPVLIGIAFLPVIILIIPVNVFFKLLLLGMVILVVATAWSGKKLSIKNS
KLGKYLSFYWLIAFILIVWLIGGGLGLKSVSTNDWGGLMLTVLMAVVSIFLSFPLGVLLALGRQSTLPVIRIFSIGYIEI
IRGLPLISILFMGQILIPLFLPDGMRPDRIFRAILGLTLFSAAYLAENVRGGLQSVLRGQSEAAKALGLNTPLSLGLIVL
PQALKVAIPSIVGQFISLFQDTTLLSIVGLVELLGISRSILAQPEFLGDYAEVYLFDGIIFWIVCYAMSVGSRQLEKKLN
TTN

Sequences:

>Translated_403_residues
MKKINTNEFYAPPFPENNAIKWLRENFFSTWYNTLLSLILFSLILWGVINFISWAKTEAEWQVIKVNLPLLMVGRYPRDQ
YWRIWVIVGIISSLFGFSWGVIARNSAQLFTLPVLIGIAFLPVIILIIPVNVFFKLLLLGMVILVVATAWSGKKLSIKNS
KLGKYLSFYWLIAFILIVWLIGGGLGLKSVSTNDWGGLMLTVLMAVVSIFLSFPLGVLLALGRQSTLPVIRIFSIGYIEI
IRGLPLISILFMGQILIPLFLPDGMRPDRIFRAILGLTLFSAAYLAENVRGGLQSVLRGQSEAAKALGLNTPLSLGLIVL
PQALKVAIPSIVGQFISLFQDTTLLSIVGLVELLGISRSILAQPEFLGDYAEVYLFDGIIFWIVCYAMSVGSRQLEKKLN
TTN
>Mature_403_residues
MKKINTNEFYAPPFPENNAIKWLRENFFSTWYNTLLSLILFSLILWGVINFISWAKTEAEWQVIKVNLPLLMVGRYPRDQ
YWRIWVIVGIISSLFGFSWGVIARNSAQLFTLPVLIGIAFLPVIILIIPVNVFFKLLLLGMVILVVATAWSGKKLSIKNS
KLGKYLSFYWLIAFILIVWLIGGGLGLKSVSTNDWGGLMLTVLMAVVSIFLSFPLGVLLALGRQSTLPVIRIFSIGYIEI
IRGLPLISILFMGQILIPLFLPDGMRPDRIFRAILGLTLFSAAYLAENVRGGLQSVLRGQSEAAKALGLNTPLSLGLIVL
PQALKVAIPSIVGQFISLFQDTTLLSIVGLVELLGISRSILAQPEFLGDYAEVYLFDGIIFWIVCYAMSVGSRQLEKKLN
TTN

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=411, Percent_Identity=36.0097323600973, Blast_Score=234, Evalue=7e-63,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=31.7307692307692, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1788226, Length=204, Percent_Identity=34.3137254901961, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1786874, Length=179, Percent_Identity=30.7262569832402, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787030, Length=166, Percent_Identity=28.9156626506024, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI48994930, Length=82, Percent_Identity=35.3658536585366, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1788645, Length=211, Percent_Identity=28.436018957346, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 44878; Mature: 44878

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKINTNEFYAPPFPENNAIKWLRENFFSTWYNTLLSLILFSLILWGVINFISWAKTEAE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WQVIKVNLPLLMVGRYPRDQYWRIWVIVGIISSLFGFSWGVIARNSAQLFTLPVLIGIAF
EEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHH
LPVIILIIPVNVFFKLLLLGMVILVVATAWSGKKLSIKNSKLGKYLSFYWLIAFILIVWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
IGGGLGLKSVSTNDWGGLMLTVLMAVVSIFLSFPLGVLLALGRQSTLPVIRIFSIGYIEI
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IRGLPLISILFMGQILIPLFLPDGMRPDRIFRAILGLTLFSAAYLAENVRGGLQSVLRGQ
HHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SEAAKALGLNTPLSLGLIVLPQALKVAIPSIVGQFISLFQDTTLLSIVGLVELLGISRSI
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LAQPEFLGDYAEVYLFDGIIFWIVCYAMSVGSRQLEKKLNTTN
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKINTNEFYAPPFPENNAIKWLRENFFSTWYNTLLSLILFSLILWGVINFISWAKTEAE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WQVIKVNLPLLMVGRYPRDQYWRIWVIVGIISSLFGFSWGVIARNSAQLFTLPVLIGIAF
EEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHH
LPVIILIIPVNVFFKLLLLGMVILVVATAWSGKKLSIKNSKLGKYLSFYWLIAFILIVWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH
IGGGLGLKSVSTNDWGGLMLTVLMAVVSIFLSFPLGVLLALGRQSTLPVIRIFSIGYIEI
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
IRGLPLISILFMGQILIPLFLPDGMRPDRIFRAILGLTLFSAAYLAENVRGGLQSVLRGQ
HHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
SEAAKALGLNTPLSLGLIVLPQALKVAIPSIVGQFISLFQDTTLLSIVGLVELLGISRSI
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LAQPEFLGDYAEVYLFDGIIFWIVCYAMSVGSRQLEKKLNTTN
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]